View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_48 (Length: 312)
Name: NF1342_low_48
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 284
Target Start/End: Original strand, 6818859 - 6819118
Alignment:
| Q |
30 |
attgacatacttgttactttaaaaaacctattcaacaaagatatgaaggtcatgcatgttccatagttcaatggatagtgatgagaagtctgagtgtgtg |
129 |
Q |
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| T |
6818859 |
attgacatacttgttactttaaaaaacctattcaacaaagataagaaggtcatgcatgttccatagttcaatggatagtgacgagaagtctgagtgtatg |
6818958 |
T |
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| Q |
130 |
cttcgttaatatggtcatatatttcttccttgtcctcatcaacaaacgaacctgacact---gacacaaacacctgttatcatcacttactaggaaaatg |
226 |
Q |
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| T |
6818959 |
cttcgttaatatggtcatatctttcttccttgtcctcatcaactattgaacctgacattgacgacacaaacacctgttatcatcacttactaggaaaatg |
6819058 |
T |
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| Q |
227 |
ttaaggcat--gaattatctcacttgttaatgtgaattactggacgagcttaatcttgaa |
284 |
Q |
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| T |
6819059 |
ttaaggcatgagaattatctcacttgttaatgtgaattactggacgagcttaatcttgaa |
6819118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 6810661 - 6810832
Alignment:
| Q |
30 |
attgacatacttgttactttaaaaaacctattcaacaaagatatgaaggtcatgcatgttccatagttcaatggatagtgatgagaagtctgagtgtgtg |
129 |
Q |
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| T |
6810661 |
attgacatacttgttactttaaagccactattcaacaaagataagaaggtcatgcatgttccatagttcaatggatagtgacgagaagtctgagtgtatg |
6810760 |
T |
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| Q |
130 |
cttcgttaatatggtcatatatttcttccttgtcctcatcaacaaacgaacctgacactgacacaaacacct |
201 |
Q |
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| T |
6810761 |
cttcgttaatatggtcatatctttcttccttgtcgtcatcaacaaacgaacctgacactgacagaagcacct |
6810832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 30 - 263
Target Start/End: Original strand, 6833418 - 6833651
Alignment:
| Q |
30 |
attgacatacttgttactttaaaaaacctattcaacaaagatatgaaggtcatgcatgttccatagttcaatggatagtgatgagaagtctgagtgtgtg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| |
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| T |
6833418 |
attgacatacttgttactttaaaaaacctattcaacaaagatatgaaggtcatgcatgttccatagttcagtggatagtgatgagaggtctgtgtgtgtg |
6833517 |
T |
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| Q |
130 |
cttcgttaatatggtcatatatttcttccttgtcctcatcaacaaacgaacctgacactgacacaaacacctgttatc----atca--cttactaggaaa |
223 |
Q |
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| T |
6833518 |
ct---tgaat---gtcatatctttcttccttgtcctcatcaacaattgaacctgacattggcacaaacaccttttatcacttatcagtattacaaagaaa |
6833611 |
T |
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| Q |
224 |
atgttaaggcatgaattatctcacttgttaatgtgaatta |
263 |
Q |
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| T |
6833612 |
atgtttaggcataaattaagtcacttgttattgtgaatta |
6833651 |
T |
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