View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_54 (Length: 287)
Name: NF1342_low_54
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 3879031 - 3878743
Alignment:
| Q |
1 |
tcacgcagggtttcatcgctgacacaagaacagttacgcatgtccagcttcaccagttgagggcatgaagttgcagcagcacgaataacagcatcaggaa |
100 |
Q |
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| T |
3879031 |
tcacgcagggtttcatcgctgacacaagaacagttacgcatgtccagcttcaccagttgagggcatgaagttgcaacagcacgaataacagcatcaggaa |
3878932 |
T |
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| Q |
101 |
gtttgttgcaagaaccaatatcaagttcatgtagaagagggcaatcaagtacaacatgtgccatgttactgctc--------------tttaagttgtgg |
186 |
Q |
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| T |
3878931 |
gtttgttgcaagaaccaatatcaagttcatgtagaagagggcaatcaagtacaacctgtgccatgttactgctcttcaaagacatagttttaagttgtgg |
3878832 |
T |
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| Q |
187 |
gcacctgaaaaatgaataaaccatcactttttattttatcatcggaggtgtcagtcaaactttgaggcatattctcctgacttgtattc |
275 |
Q |
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| T |
3878831 |
gcacctgaaaaatgaataaaccatcactttttattttatcatcggaggtgtcagtcaaactttgaggcatattcacctgacttgtattc |
3878743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 3865034 - 3864801
Alignment:
| Q |
1 |
tcacgcagggtttcatcgctgacacaagaacagttacgcatgtccagcttcaccagttgagggcatgaagttgcagcagcacgaataacagcatcaggaa |
100 |
Q |
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| T |
3865034 |
tcacgcagtgtttcatcgctgacacaagaacaattacgcatgtccagtttcactagttgagggcatgaagttgcagcagcacgaatagcagcatcaggaa |
3864935 |
T |
|
| Q |
101 |
gtttgttgcaagaaccaatatcaagttcatgtagaagagggcaatcaagtacaacatgtgccatgttactgctc--------------tttaagttgtgg |
186 |
Q |
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| T |
3864934 |
gtttgtggcaagaacccatatcaagttcaagcagaagagggcaattaagcacaacttgtgccatgttactgcgcttcaatgacatggttttaagttgcgg |
3864835 |
T |
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| Q |
187 |
gcacctgaaaaatgaataaaccatcactttttat |
220 |
Q |
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| T |
3864834 |
gcacctgaaaaaagaataaaccatcactttttat |
3864801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 8357452 - 8357532
Alignment:
| Q |
33 |
gttacgcatgtccagcttcaccagttgagggcatgaagttgcagcagcacgaataacagcatcaggaagtttgttgcaaga |
113 |
Q |
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| T |
8357452 |
gttacacatgtccatcttcactaatagagggcatgaacttgcagccgaaccgatagcagcataaggaagtttgtggcaaga |
8357532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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