View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_55 (Length: 286)
Name: NF1342_low_55
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 34 - 242
Target Start/End: Complemental strand, 14132094 - 14131887
Alignment:
| Q |
34 |
ttggatttgaaggaatattaggattcttatcaaagtaaagactagactgagactgattattagcattcttatcctcaggattttcagattaggtcaaatt |
133 |
Q |
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| T |
14132094 |
ttggatttgaatgaaaattaggattctgatcaaagtaaagaccagactaagactgattattagcattcttatcatcaggatttgcagattaggtcaaatt |
14131995 |
T |
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| Q |
134 |
ggcagaaacagagtctccacctaatgttttcttgaactttttcattacgttattcttgagtgagtaattgagactcaagttcatccaaagagataattta |
233 |
Q |
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| T |
14131994 |
gacagaaacagagtctccacctaatgctttcttgaac-ttttcattacgttcttcatgagtgagtatttgagactcaagttcatccaaagagataattta |
14131896 |
T |
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| Q |
234 |
tgcctgact |
242 |
Q |
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| T |
14131895 |
tgcctgact |
14131887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 283
Target Start/End: Complemental strand, 45515708 - 45515679
Alignment:
| Q |
254 |
caacaatatcttcaacccatctgaagtaag |
283 |
Q |
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| T |
45515708 |
caacaatatcttcaacccatctgaagtaag |
45515679 |
T |
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