View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_59 (Length: 278)
Name: NF1342_low_59
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_59 |
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Alignment Details
Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 11124950 - 11125044
Alignment:
| Q |
39 |
ataatataggggatcaaacatacaattaagccttattttaattgtgttcttcttttgagataattatatttgtgtcaatccatagtatacttgtt |
133 |
Q |
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| T |
11124950 |
ataatataggggatcaaacatacaattaagccttattttaattgtgttcttcttttcagataattatatttgtggcaatccatagtatacttgtt |
11125044 |
T |
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Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 11122293 - 11122375
Alignment:
| Q |
48 |
gggatcaaacatacaattaagccttattttaattgtgttcttcttttgagataattatatttgtgtcaatccatagtatactt |
130 |
Q |
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| T |
11122293 |
gggatcaaacatacaattaagccttattttaattgtgttcttcttttcagataattatatttgtggcaatccaaaggatactt |
11122375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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