View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_6 (Length: 635)
Name: NF1342_low_6
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 106 - 624
Target Start/End: Original strand, 3878957 - 3879475
Alignment:
| Q |
106 |
tgcaacttcatgccctcaactggtgaagctggacatgcgtaactgttcttgtgtcagcgatgaaaccctgcgtgaaatagcgcagcattgtcctaatctt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3878957 |
tgcaacttcatgccctcaactggtgaagctggacatgcgtaactgttcttgtgtcagcgatgaaaccctgcgtgaaatagcgcagcattgtcctaatctt |
3879056 |
T |
|
| Q |
206 |
ggttttcttgattcatcatactgcccaagcatatctttggaggtgtgcttcaaattgtatactcgcttttttgcatatgtaagcttgtattttgaactaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879057 |
ggttttcttgattcatcatactgcccaagcatatctttggaggtgtgcttcaaattgtatactcgcttttttgcatatgtaagcttgtattttgaactaa |
3879156 |
T |
|
| Q |
306 |
agtatatggcttttctcttttaagtcggttcggatgacaatgttgacaattctaaggcttcatagctgcgagggcatcacttctgcatcaatggctgcta |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879157 |
agtatatggcttttctcttttaagtcggttcggatgacaatgttgacaattctaaggcttcatagctgcgagggcatcacttctgcatcaatggctgcta |
3879256 |
T |
|
| Q |
406 |
tagctcatagctctatgttggaggtattttatctgtcccagatattgatattaatgacatgtctgaattcatgagtattacgattaatacattttatcac |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
3879257 |
tagctcatagctctatgttggaggtattttatctgtcccagatattgatattaatgacatgtctgaattcatgagtattacgattaatacatttaaccac |
3879356 |
T |
|
| Q |
506 |
cccgccaatgcaggttttgtaactccgcagttgcagtctattgacttaagcgtcgttggatcttccacgtttgaagaatattagattggcgtactgtcgc |
605 |
Q |
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| T |
3879357 |
cccgccaatgcaggttttgtaactccgcagttgcagtctattgacttgagcgtcgttggatcttccacatttgaagaatattagattggcgtactgtcgc |
3879456 |
T |
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| Q |
606 |
aagtatgtttctgcttcat |
624 |
Q |
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||||||||||||||||||| |
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| T |
3879457 |
aagtatgtttctgcttcat |
3879475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 104 - 624
Target Start/End: Original strand, 3864958 - 3865493
Alignment:
| Q |
104 |
gctgcaacttcatgccctcaactggtgaagctggacatgcgtaactgttcttgtgtcagcgatgaaaccctgcgtgaaatagcgcagcattgtcctaatc |
203 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||||| |
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| T |
3864958 |
gctgcaacttcatgccctcaactagtgaaactggacatgcgtaattgttcttgtgtcagcgatgaaacactgcgtgaaatagcacaacattgtcctaatc |
3865057 |
T |
|
| Q |
204 |
ttggttttcttgattcatcatactgcccaagcatatctttggaggtgtgcttcaaattgtatactcgcttttttgcatatgtaagcttgtattttgaact |
303 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||||||||| |||| ||||||||||||| |
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| T |
3865058 |
ttggttttcttgatgcatcatactgcccaaacatatctttggaggtgtgctttaaactgtatact-tattttttgcatatttaagattgtattttgaaca |
3865156 |
T |
|
| Q |
304 |
aaagtatatggct------------------tttctcttttaagtcggttcggatgacaatgttgacaattctaaggcttcatagctgcgagggcatcac |
385 |
Q |
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| ||| | | ||| ||||| ||||||||| ||||| | |||||||||| |||||||| ||||||||||| ||||||||||| |
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| T |
3865157 |
agagtttctagctttgtctgacacggtcacctttcttttttaagtctgttcgactcccaatgttgaccattctaagacttcatagctgtgagggcatcac |
3865256 |
T |
|
| Q |
386 |
ttctgcatcaatggctgctatagctcatagctctatgttggaggtattttatctgtcccagatattgatattaatgacatgtctgaattcatgagtatta |
485 |
Q |
| |
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|||||| ||||||||||| |||||||| || |||||||||||||||| |||| ||| ||||||||||||||||| ||| ||||||||||| |||||||| |
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| T |
3865257 |
ttctgcgtcaatggctgcaatagctcacagttctatgttggaggtatgttatttgttccagatattgatattaacgacttgtctgaattcccgagtatta |
3865356 |
T |
|
| Q |
486 |
cgattaatacattttatcaccccgccaatgcaggttttgtaactccgcagttgcagtctattgacttaagcgtcgttggatcttccacgtttgaagaata |
585 |
Q |
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|| | ||||| || | | |||||||||||||||| | || || ||||||||||||||||| | |||||||||||||||||||||| |||||| |
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| T |
3865357 |
ggacgagtacatgacataa--ctgccaatgcaggttttggagcttgacaattgcagtctattgacttcggtgtcgttggatcttccacgtttgcagaata |
3865454 |
T |
|
| Q |
586 |
ttagattggcgtactgtcgcaagtatgtttctgcttcat |
624 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
3865455 |
ttagattggtgtactgtcgcaagtatgtttctgcttcat |
3865493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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