View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_60 (Length: 278)
Name: NF1342_low_60
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 4845191 - 4844958
Alignment:
| Q |
1 |
taaggcaacattgtttgttgaggaaccacaattgatggctaaattgtaatcagggttgtatgagttaataactagatggaacaaaaacaaatagatagat |
100 |
Q |
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| T |
4845191 |
taaggcaacattgtttgttgaggaaccacaattgatggctaaattgtaatcagggttgtatgagttaataactagagggaacaaaaccaaatagatagat |
4845092 |
T |
|
| Q |
101 |
agtagggtgattttagtgtgaaattttttgtttatggattttgccatagttgtgttgtgtgagaatagagtgaagaagagtagattttgtttttcttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4845091 |
agtagggtgattttagtgtgaaattttttgtttatggagtttggcatagttgtgttgtgtgagaatagagtgaagaagactagattttgtttttcttgtt |
4844992 |
T |
|
| Q |
201 |
gagtgttaggatgcttgaagttgcacttatttat |
234 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| |
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| T |
4844991 |
gattgttaggatgcttgaagttgcacttatttat |
4844958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 4711252 - 4711035
Alignment:
| Q |
12 |
tgtttgttgaggaaccacaattgatggctaaattgtaatcagggttgtatgagttaataactagatggaacaaaaacaaatagatagatagtagggtgat |
111 |
Q |
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| T |
4711252 |
tgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagggaacaagagcaaatagagagatagtagggtaat |
4711153 |
T |
|
| Q |
112 |
tttagtgtgaaattttttgtttatggattttgccatagttgtgttgtgtgagaatagagtgaagaagagtagattttgtttttcttgttgagtgttagga |
211 |
Q |
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| T |
4711152 |
tttagtgtgaaatttttcgtttatggagtttgccatagttatgt-----gaaaatagagtgaagaagagtagattttgtttttcttgttgagtgttagga |
4711058 |
T |
|
| Q |
212 |
tgcttgaagttgcacttatttat |
234 |
Q |
| |
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|||||||||||||| |||||||| |
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| T |
4711057 |
tgcttgaagttgcatttatttat |
4711035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 4696342 - 4696210
Alignment:
| Q |
19 |
tgaggaaccacaattgatggctaaattgtaatcagggttgtatgagttaataactagatggaacaaaaacaaatagatagatagtagggtgattttagtg |
118 |
Q |
| |
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|||||| |||||||||||||||||||||||| ||||| ||||||| || ||||||| ||||||| | |||| || |||||| ||| ||||||||||| |
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| T |
4696342 |
tgaggagccacaattgatggctaaattgtaaatagggtcgtatgaggtagcaactagagggaacaatagcaaaatgagagatagcaggatgattttagtg |
4696243 |
T |
|
| Q |
119 |
tgaaattttttgtttatggattttgccatagtt |
151 |
Q |
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| T |
4696242 |
tgaaattttttgtttctggagtttgccatagtt |
4696210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 4673630 - 4673776
Alignment:
| Q |
9 |
cattgtttgttgaggaaccacaattgatggctaaattgtaatcagggttgtatgagttaataactagatggaacaaaaacaaatagatagatagtagggt |
108 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| || ||||||||| || ||||||| ||||||| | |||| || | ||||||||| |
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| T |
4673630 |
cattgtttgttgaggaaccacaattgatggctaaattgtaaattggtttgtatgaggtagcaactagagggaacaagagcaaaatgagcggtagtagggt |
4673729 |
T |
|
| Q |
109 |
gattttagtgtgaaattttttgtttatggattttgccatagttgtgt |
155 |
Q |
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| T |
4673730 |
gatttttgtgtaattttttttgtttatggagtttgccatagctgtgt |
4673776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 4637790 - 4637924
Alignment:
| Q |
21 |
aggaaccacaattgatggctaaattgtaatcagggttgtatgagttaataactagatggaacaaaaacaaatagatagatagtagggtgattttagtgtg |
120 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||| | |||| | | |||| ||| ||||||| | ||||||| |||| |
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| T |
4637790 |
aggagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactaaagggaaaagtagcaaaaagagggatagtatgctgatttttgtgta |
4637889 |
T |
|
| Q |
121 |
aaattttttgtttatggattttgccatagttgtgt |
155 |
Q |
| |
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|| |||||||||||||| |||||||||| ||||| |
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| T |
4637890 |
aatgtttttgtttatggagtttgccatagctgtgt |
4637924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 4654437 - 4654559
Alignment:
| Q |
26 |
ccacaattgatggctaaattgtaatcagggttgtatgagttaataactagatggaacaaaaacaaatagatagatagtagggtgattttagtgtgaaatt |
125 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||| | || |||| ||||||| | |||| ||| |||||||| | | ||||| |||| || | |
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| T |
4654437 |
ccacaatcgatagctaaattgtaatcagggttgtatgagtaagcaattagagggaacaatagcaaaaagagagatagtatgctcatttttgtgtaaatgt |
4654536 |
T |
|
| Q |
126 |
ttttgtttatggattttgccata |
148 |
Q |
| |
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||||||||||||| ||||||||| |
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| T |
4654537 |
ttttgtttatggagtttgccata |
4654559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 4783000 - 4782949
Alignment:
| Q |
12 |
tgtttgttgaggaaccacaattgatggctaaattgtaatcagggttgtatga |
63 |
Q |
| |
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||||||||||||| |||||| ||||||||||| ||||||||||||||||||| |
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| T |
4783000 |
tgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatga |
4782949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 4815429 - 4815378
Alignment:
| Q |
12 |
tgtttgttgaggaaccacaattgatggctaaattgtaatcagggttgtatga |
63 |
Q |
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||||||||||||| |||||| ||||||||||| ||||||||||||||||||| |
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| T |
4815429 |
tgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatga |
4815378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 4864940 - 4864998
Alignment:
| Q |
97 |
agatagtagggtgattttagtgtgaaattttttgtttatggattttgccatagttgtgt |
155 |
Q |
| |
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||||||||||||||||||||||| || ||| |||||||| || |||||||||||||||| |
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|
| T |
4864940 |
agatagtagggtgattttagtgtaaagtttcttgtttatcgagtttgccatagttgtgt |
4864998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 4663633 - 4663725
Alignment:
| Q |
22 |
ggaaccacaattgatggctaaattgtaatcagggttgtatgagttaataactagatggaacaaaaacaaatagatagatagtagggtgatttt |
114 |
Q |
| |
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|||||||||| ||||||||||||||||| |||||||||||| || || |||| ||||||| | |||| || |||||||| | ||||||| |
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| T |
4663633 |
ggaaccacaactgatggctaaattgtaaattgggttgtatgaggtagcaattagagggaacaatagcaaaatgagagatagtatgctgatttt |
4663725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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