View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_62 (Length: 274)
Name: NF1342_low_62
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 30 - 264
Target Start/End: Complemental strand, 29015951 - 29015717
Alignment:
| Q |
30 |
gattctaaaagcaaactgtactttgatgctatttcacttcttgaatcagaatcagaaccagtttttggtagccatctagaagcataaattttcaacgcat |
129 |
Q |
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| T |
29015951 |
gattctaaaagcaaactgtactttgatgctatttcacttcttgaatcagaatcggaaccggtttttggtagccatctagaagcataaattttcaacgcat |
29015852 |
T |
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| Q |
130 |
caccgatgagatttaaaggcatttttccatcagattttaaagcaatcatgattctccaataaagatcaattttcaattcagctaaatcttcaccccacca |
229 |
Q |
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| T |
29015851 |
caccgatgagatttaaaggcatttttccatcagattttaaagcaatcatgattctccaataaagatcaattttcaattcagctaaatcttcaccccacca |
29015752 |
T |
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| Q |
230 |
tctttttcttactgatttatctctcaaactctctg |
264 |
Q |
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| T |
29015751 |
tccttttcttactgatttatctctcaaactttctg |
29015717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 264
Target Start/End: Complemental strand, 14129434 - 14129263
Alignment:
| Q |
93 |
tttggtagccatctagaagcataaattttcaacgcatcaccgatgagatttaaaggcatttttccatcagattttaaagcaatcatgattctccaataaa |
192 |
Q |
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||||||| ||||||||| |||||||||||||| ||||| || ||||||||| |||| | || ||| ||||||| | || ||||| |||||||||||| |
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| T |
14129434 |
tttggtaaccatctagatgcataaattttcaatgcatcgccaatgagatttgaaggaaccttgccaccagatttgattgctatcattgttctccaataaa |
14129335 |
T |
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| Q |
193 |
gatcaattttcaattcagctaaatcttcaccccaccatctttttcttactgatttatctctcaaactctctg |
264 |
Q |
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| || || | | || |||||||||||| ||||||||| ||| ||| ||||||| ||||||||| |||| |
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| T |
14129334 |
ggtctatgctaagctctgctaaatcttcagcccaccatcctttacttcctgatttgattctcaaactttctg |
14129263 |
T |
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