View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_65 (Length: 268)
Name: NF1342_low_65
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 103 - 217
Target Start/End: Original strand, 33563772 - 33563886
Alignment:
| Q |
103 |
cttcataaggagattgactatcgcattcttgagctaaaagcacataaaggcaattagtttttggactggaacgagctaatgtaaagaaatggggtaatgg |
202 |
Q |
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|||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| | |
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| T |
33563772 |
cttcataaggagattgaccatcgcattcttgtgctaaaatcacataaaggcaattagtttttggagtggaacaacctaatgtaaagaaatggggtaatcg |
33563871 |
T |
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| Q |
203 |
aaacgtgctaactta |
217 |
Q |
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||||||||||||||| |
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| T |
33563872 |
aaacgtgctaactta |
33563886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 38460736 - 38460796
Alignment:
| Q |
157 |
tagtttttggactggaacgagctaatgtaaagaaatggggtaatggaaacgtgctaactta |
217 |
Q |
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||||||||| ||| ||| || ||||||||||||||| |||||||||||| |||||||||| |
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| T |
38460736 |
tagtttttgtactagaaaaagttaatgtaaagaaatgtggtaatggaaacttgctaactta |
38460796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 115 - 243
Target Start/End: Original strand, 39163551 - 39163677
Alignment:
| Q |
115 |
attgactatcgcattcttgagctaaaagcacataaaggcaattagtttttggactggaacgagctaatgtaaagaaatggggtaatggaaacgtgctaac |
214 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| ||||||||| |||||||| |
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| T |
39163551 |
attgaatatcgcattcttgagctaaaagcacataaaggctattagtttttggactggaacaagctaatgtaaacaaatgccataatggaaatgtgctaac |
39163650 |
T |
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| Q |
215 |
ttaatttgatttataattgactttgacgc |
243 |
Q |
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| T |
39163651 |
ttaatttgatt--taattggctttgacgc |
39163677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 103 - 217
Target Start/End: Original strand, 39225108 - 39225222
Alignment:
| Q |
103 |
cttcataaggagattgactatcgcattcttgagctaaaagcacataaaggcaattagtttttggactggaacgagctaatgtaaagaaatggggtaatgg |
202 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| ||| ||| |||||||||||| |||||||||||||| |
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| T |
39225108 |
cttcataaggagatcgactatcgcattcttgagctcaaagcacataaaggctgttagtttttgggctgaaacaagctaatgtaaacaaatggggtaatgg |
39225207 |
T |
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| Q |
203 |
aaacgtgctaactta |
217 |
Q |
| |
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|||| |||||||||| |
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| T |
39225208 |
aaacctgctaactta |
39225222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 103 - 245
Target Start/End: Complemental strand, 39204078 - 39203929
Alignment:
| Q |
103 |
cttcataaggagattgactatcgcattcttgagctaaaagcacataaaggcaattagtttttggactggaacgagctaatgtaaag---------aaatg |
193 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||| |||| ||||| |
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| T |
39204078 |
cttcataaggagattgaatatcgcattcttgagctaaaagcacataaaggctattagttattggactggaacaagctaatggaaagaatgaaaacaaatg |
39203979 |
T |
|
| Q |
194 |
gggtaatggaaacgtgctaacttaatttgatttataattgactttgacgcga |
245 |
Q |
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||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
39203978 |
cggtaatggaaatatgctaacttaatttgatt--taattgactttgacgcga |
39203929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 39180097 - 39180173
Alignment:
| Q |
99 |
tcaacttcataaggagattgactatcgcattcttgagctaaaagcacataaaggcaattagtttttggactggaacg |
175 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39180097 |
tcaacttcataaggagattgactatcgcattcttgagctaaaagcacataaaggcaattagtttttggactgaaacg |
39180173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 217
Target Start/End: Complemental strand, 39386000 - 39385895
Alignment:
| Q |
112 |
gagattgactatcgcattcttgagctaaaagcacataaaggcaattagtttttggactggaacgagctaatgtaaagaaatggggtaatggaaacgtgct |
211 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| | ||||| ||||||||||||||||||||||||||| |
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| T |
39386000 |
gagattgaatatcgcattcttgagctaaaagcacataaaggcaaatagtttttgtactaaaacaacttaatgcaaagaaatggggtaatggaaacgtgct |
39385901 |
T |
|
| Q |
212 |
aactta |
217 |
Q |
| |
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|||||| |
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|
| T |
39385900 |
aactta |
39385895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 217
Target Start/End: Original strand, 39372595 - 39372707
Alignment:
| Q |
107 |
ataaggagattgactatcgcattcttgagctaaaagcacataaaggcaattagtttttggactggaacgagcta--atgtaaagaaatggggtaatggaa |
204 |
Q |
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||||||||||| | ||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| ||| ||||| ||||||||||||||| || |
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| T |
39372595 |
ataaggagattcaatatcgcattcttgagcttaaagcacataaaggccattagtttttgtactggaacagactaatatgtatagaaatggggtaatgcaa |
39372694 |
T |
|
| Q |
205 |
acgtgctaactta |
217 |
Q |
| |
|
|| |||||||||| |
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| T |
39372695 |
acctgctaactta |
39372707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 39217853 - 39217909
Alignment:
| Q |
109 |
aaggagattgactatcgcattcttgagctaaaagcacataaaggcaattagtttttg |
165 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
39217853 |
aaggaaattgactatcgcattcttgagctaaaaggacataaaggcaattaggttttg |
39217909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 39379218 - 39379123
Alignment:
| Q |
121 |
tatcgcattcttgagctaaaagcacataaaggcaattagtttttggactggaacgagctaatgtaaagaaatggggtaatggaaacgtgctaactta |
217 |
Q |
| |
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|||||||| |||||||| ||||||||||||| || |||| |||| | | |||| | || ||||||||||||||||||||||||||| ||||||||| |
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| T |
39379218 |
tatcgcatgcttgagctgcaagcacataaaggaaagtagtgtttgtagtagaacaacctgatgtaaagaaatggggtaatggaaacg-gctaactta |
39379123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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