View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_66 (Length: 265)
Name: NF1342_low_66
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_66 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33456653 - 33456426
Alignment:
| Q |
1 |
gaattcctcaacacattaacaacacctaaagaagaagaaga------tgaaccaaatccaacatgtccttgatgaatatgattaatctgtcctaatccac |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33456653 |
gaattcctcaacacattaacaacacctaaagaagaagaagaagaagatgaaccaaatccaacatgtccttgatgaatatgattaatctgtcctaatccac |
33456554 |
T |
|
| Q |
95 |
ctccttgtaaatgatgatgatgaacactaccaagattcttgtaagaagttcctggtcctccttgattgtaatatagaaaaccaccagcagcagcatctcc |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33456553 |
ctccttgtaaatgatgatgatgaacactaccaagattcttgtaagaagttcctggtcctccttgattgtaatatagaaaaccaccagcagcagcatctcc |
33456454 |
T |
|
| Q |
195 |
cattcttaaatcctctgaatgatgatgt |
222 |
Q |
| |
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|||||||||||||||||||||||||||| |
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|
| T |
33456453 |
cattcttaaatcctctgaatgatgatgt |
33456426 |
T |
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