View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_69 (Length: 261)
Name: NF1342_low_69
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_69 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 1759725 - 1759985
Alignment:
| Q |
1 |
tatctggtgttgggtttggcatgtagaaagttggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcatggagaaagt |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1759725 |
tatctggggttgggtttggcatgtagaaagttggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcatggagaaagt |
1759824 |
T |
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| Q |
101 |
tggtggttcttgtggaatctctggaggaggaagagaactatcaggtgttgggtttggcatggagaaagatggtggttcttgtggaatctctggaggagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1759825 |
tggtggttcttgtggaatctctggaggaggaagagaactatcaggtgttgggtttggcatggagaaagatggtggttcttgtggaatctctggaggagga |
1759924 |
T |
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| Q |
201 |
agagaattatatggtgttgggtttggcatggagaaagatggtggttcttgtggaatctctg |
261 |
Q |
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| T |
1759925 |
agagaattatatggtgttgggtttggcatggagaaagatggtggttcttttggaatctctg |
1759985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 1759656 - 1759916
Alignment:
| Q |
1 |
tatctggtgttgggtttggcatgtagaaagttggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcatggagaaagt |
100 |
Q |
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|||||||||||||||||||| || ||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
1759656 |
tatctggtgttgggtttggcgtggcaaaaatcggtggttcttgtggaatctctggtggagaaagaaaaatatctggggttgggtttggcatgtagaaagt |
1759755 |
T |
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| Q |
101 |
tggtggttcttgtggaatctctggaggaggaagagaactatcaggtgttgggtttggcatggagaaagatggtggttcttgtggaatctctggaggagga |
200 |
Q |
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| T |
1759756 |
tggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcatggagaaagttggtggttcttgtggaatctctggaggagga |
1759855 |
T |
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| Q |
201 |
agagaattatatggtgttgggtttggcatggagaaagatggtggttcttgtggaatctctg |
261 |
Q |
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| T |
1759856 |
agagaactatcaggtgttgggtttggcatggagaaagatggtggttcttgtggaatctctg |
1759916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 1759794 - 1760048
Alignment:
| Q |
1 |
tatctggtgttgggtttggcatgtagaaagttggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcatggagaaagt |
100 |
Q |
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| T |
1759794 |
tatctggtgttgggtttggcatggagaaagttggtggttcttgtggaatctctggaggaggaagagaactatcaggtgttgggtttggcatggagaaaga |
1759893 |
T |
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| Q |
101 |
tggtggttcttgtggaatctctggaggaggaagagaactatcaggtgttgggtttggcatggagaaagatggtggttcttgtggaatctctggaggagga |
200 |
Q |
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| T |
1759894 |
tggtggttcttgtggaatctctggaggaggaagagaattatatggtgttgggtttggcatggagaaagatggtggttcttttggaatctctggaggagaa |
1759993 |
T |
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| Q |
201 |
agagaattatatggtgttgggtttggcatggagaaagatggtggttcttgtggaa |
255 |
Q |
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| T |
1759994 |
ggcgaattatctggtgttggatttggcgtggtgaaagatgggggttgttgtggaa |
1760048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 1759587 - 1759847
Alignment:
| Q |
1 |
tatctggtgttgggtttggcatgtagaaagttggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcatggagaaagt |
100 |
Q |
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|||| |||||||| |||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | |
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| T |
1759587 |
tatcaggtgttggatttggcgtggcgatagttggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcgtggcaaaaat |
1759686 |
T |
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| Q |
101 |
tggtggttcttgtggaatctctggaggaggaagagaactatcaggtgttgggtttggcatggagaaagatggtggttcttgtggaatctctggaggagga |
200 |
Q |
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||||||||||||||||||||||| |||| |||| || |||| || ||||||||||||||| |||||| |||||||||||||||||||||||| |||| | |
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| T |
1759687 |
cggtggttcttgtggaatctctggtggagaaagaaaaatatctggggttgggtttggcatgtagaaagttggtggttcttgtggaatctctggtggagaa |
1759786 |
T |
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| Q |
201 |
agagaattatatggtgttgggtttggcatggagaaagatggtggttcttgtggaatctctg |
261 |
Q |
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| T |
1759787 |
agaaaaatatctggtgttgggtttggcatggagaaagttggtggttcttgtggaatctctg |
1759847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 1759518 - 1759778
Alignment:
| Q |
1 |
tatctggtgttgggtttggcatgtagaaagttggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcatggagaaagt |
100 |
Q |
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||||||||||||| ||||||||| |||| |||||||||| ||||||||||| || ||||||||||||||||| |||||||| |||||| ||| || ||| |
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| T |
1759518 |
tatctggtgttggatttggcatggcgaaaattggtggttcctgtggaatctcaggaggagaaagaaaaatatcaggtgttggatttggcgtggcgatagt |
1759617 |
T |
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| Q |
101 |
tggtggttcttgtggaatctctggaggaggaagagaactatcaggtgttgggtttggcatggagaaagatggtggttcttgtggaatctctggaggagga |
200 |
Q |
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| T |
1759618 |
tggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcgtggcaaaaatcggtggttcttgtggaatctctggtggagaa |
1759717 |
T |
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| Q |
201 |
agagaattatatggtgttgggtttggcatggagaaagatggtggttcttgtggaatctctg |
261 |
Q |
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||| || ||| ||| ||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
1759718 |
agaaaaatatctggggttgggtttggcatgtagaaagttggtggttcttgtggaatctctg |
1759778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 31 - 261
Target Start/End: Original strand, 1759479 - 1759709
Alignment:
| Q |
31 |
ttggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcatggagaaagttggtggttcttgtggaatctctggaggagg |
130 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||| |||| |||||||||| ||||||||||| ||||||| |
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| T |
1759479 |
ttggtggttcttgtggaatctcaggaggagaaagaaaaatatctggtgttggatttggcatggcgaaaattggtggttcctgtggaatctcaggaggaga |
1759578 |
T |
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| Q |
131 |
aagagaactatcaggtgttgggtttggcatggagaaagatggtggttcttgtggaatctctggaggaggaagagaattatatggtgttgggtttggcatg |
230 |
Q |
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| T |
1759579 |
aagaaaaatatcaggtgttggatttggcgtggcgatagttggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcgtg |
1759678 |
T |
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| Q |
231 |
gagaaagatggtggttcttgtggaatctctg |
261 |
Q |
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| ||| |||||||||||||||||||||| |
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| T |
1759679 |
gcaaaaatcggtggttcttgtggaatctctg |
1759709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 86 - 261
Target Start/End: Original strand, 1759465 - 1759640
Alignment:
| Q |
86 |
tggcatggagaaagttggtggttcttgtggaatctctggaggaggaagagaactatcaggtgttgggtttggcatggagaaagatggtggttcttgtgga |
185 |
Q |
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| T |
1759465 |
tggcatggcaaaaattggtggttcttgtggaatctcaggaggagaaagaaaaatatctggtgttggatttggcatggcgaaaattggtggttcctgtgga |
1759564 |
T |
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| Q |
186 |
atctctggaggaggaagagaattatatggtgttgggtttggcatggagaaagatggtggttcttgtggaatctctg |
261 |
Q |
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||||| ||||||| |||| || ||| |||||||| |||||| ||| || || ||||||||||||||||||||||| |
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| T |
1759565 |
atctcaggaggagaaagaaaaatatcaggtgttggatttggcgtggcgatagttggtggttcttgtggaatctctg |
1759640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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