View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_7 (Length: 595)
Name: NF1342_low_7
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 78 - 559
Target Start/End: Original strand, 33376263 - 33376751
Alignment:
| Q |
78 |
gctgttgcatttgtgcaaaatgggacctacttcatgcaatgctgactatgccacagattccctcccaatgcatcatattcttcaataatcataattaaac |
177 |
Q |
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| T |
33376263 |
gctgttgcatttgtgcaaaatgggacctacttcatgcaatgctgactatgccacagattccctcccaatgcatcatattcttcaataatcataattaaac |
33376362 |
T |
|
| Q |
178 |
aactagtttaaattcaattaataagctaataattctctattttctaatgtaccaggttctcaattatgcnnnnnnnnnng-----aaatcattctcttga |
272 |
Q |
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| T |
33376363 |
aactagtttaaattcaattaataagctaatagttctctattttctaatgtaccaggttctcaattatgcttttttttttttttttaaatcattctcttga |
33376462 |
T |
|
| Q |
273 |
acatttttgtgtgtctcagattgttcgatagtaag-gggagaaaaatctaactcgactcatttagatgccttctaatctatgactcttctttcaacatca |
371 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
33376463 |
acatttttgtgtgtctcagattgttcgatggtaagagggagaaaaatctaacttgactcatttagatgccttctaatctatgacacttctttcaacacca |
33376562 |
T |
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| Q |
372 |
aattatttactaaccacctatctcatgtataaaatatattttttaactttacattgcaaaatatttaaacttgtgcaag-attgactaagtattttatac |
470 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33376563 |
aattatttactaaccacctatctcatgtataaaatatattttttaactttacattgcaaaatatttaaacttgtgcaagcattgactaagtattttatac |
33376662 |
T |
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| Q |
471 |
aagtaaatttcattaatatattattatttactgcagatttatttatgttcnnnnnnnatgcggtagttctttttaactaattaagagaa |
559 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33376663 |
aagtaaatttcattaatatattattatttactgcagatttatttatgttctttttttatgcggtagttctttttaactaattaagagaa |
33376751 |
T |
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