View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_76 (Length: 251)
Name: NF1342_low_76
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1060776 - 1060537
Alignment:
| Q |
1 |
caaattaagccctgaaatggtgaatccttctcctcctaagggtgatgatgataaatgggatccatattgatgcattggtacaccagctcttagaacttct |
100 |
Q |
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| T |
1060776 |
caaattaagccctgaaatggtgaatccttctcctcctaagggtgatgatgataaatgggatccatattgatgcattggtacaccagctcttagaacttct |
1060677 |
T |
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| Q |
101 |
ccagtgttgatgtagttccttccatagagctggaaatgagtagcagaatctaaccctaaatgctgcatcattgttggtggtggcatattattgttaaagc |
200 |
Q |
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| T |
1060676 |
ccagtgttgatgtagttccttccatagagctggaaatgagtagcagaatctagccctaaatgctgcatcattgttggtggtgtcatattattgttaaagc |
1060577 |
T |
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| Q |
201 |
taggaggaccaacttctagattaatattgtaagggttcat |
240 |
Q |
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| T |
1060576 |
taggaggaccaacttctagattaatattgtaagggttcat |
1060537 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 50579548 - 50579581
Alignment:
| Q |
1 |
caaattaagccctgaaatggtgaatccttctcct |
34 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
50579548 |
caaattaagccctgaaatgctgaatccttctcct |
50579581 |
T |
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