View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_81 (Length: 248)
Name: NF1342_low_81
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_81 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 44140680 - 44140444
Alignment:
| Q |
5 |
atatattgttgaaaagggcatgttagaaagtattatcactaacatttttcttaacatgaatgcacttcaagattatatattataaagaattaggaaagaa |
104 |
Q |
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| T |
44140680 |
atatattgttgaaaagggcatgttagaaagtattatgactaacatttttcttaacatgaatgcacttcaagattatatattataaagaattagaaaagaa |
44140581 |
T |
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| Q |
105 |
aataacaagttaacaactttaagtggaacaatggtaaaaagcatagtccaaatgtttccattgataagaatcaaatcatctgtccttttttctcgtttcc |
204 |
Q |
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| T |
44140580 |
aataacaagttaacaactttaagtggaacaatggtaaaaagcatagtccaaatgtttccattggtaagaatcaaatcatctgtccttttttctcgtttcc |
44140481 |
T |
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| Q |
205 |
ttgcttgttcctttaattgaaaattacacctatgcta |
241 |
Q |
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| T |
44140480 |
ttgcttgttcctttaattgaaaattacacctttgcta |
44140444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 40889349 - 40889214
Alignment:
| Q |
106 |
ataacaagttaacaactttaagtggaacaatggtaaaaagcatagtccaaatgtttccattgataagaatcaaatcatctgtccttttttctcgtttcct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40889349 |
ataacaagttaacaactttaagtggaacaatggtaaaaagcatagtccaaatgtttccattgttaagaatcaaatcatctgtccttttttctcgtttcct |
40889250 |
T |
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| Q |
206 |
tgcttgttcctttaattgaaaattacacctatgcta |
241 |
Q |
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| T |
40889249 |
tgcttgttcctttaattgaaaattacacctttgcta |
40889214 |
T |
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