View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_84 (Length: 241)
Name: NF1342_low_84
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_84 |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0291 (1 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 10032255 - 10032487
Alignment:
| Q |
1 |
gcaaacagactacaacagagtaagaaaacctgtagttaggaaaaccaactttgtcacaaaagaaatccatatggacctctgtcgaaagcgaagcgtgtct |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10032255 |
gcaaacagactacaacagagtaaggaaacctgtagttaggcaaaccaactttgtcacaaaagaaatccatatggacctctgtcgaaagc-----gtgtct |
10032349 |
T |
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| Q |
101 |
aaccaaacagaaccctaaatggcgtgagaaggttgtgcaacaatttgtagtagcaaatcatcagcatttgcatctaccaattgaaatccatcgtgctcct |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10032350 |
aaccaaacagaaccctaaatggcatgagaaggttgtgcaacaatttgtagtagcaaatcatcagcatttgcatctaccaattgaaatccatcg---tcct |
10032446 |
T |
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| Q |
201 |
tattcaactttgatactaagcatcccaaatttgcattgaac |
241 |
Q |
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| T |
10032447 |
tattcaactttgatactaagcatcccaaatttgcattgaac |
10032487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 40 - 241
Target Start/End: Original strand, 15952115 - 15952311
Alignment:
| Q |
40 |
gaaaaccaactttgtcacaaaagaaatccatatggacctctgtcgaaagcgaagcgtgtctaaccaaacagaaccctaaatggcgtgagaaggttgtgca |
139 |
Q |
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| T |
15952115 |
gaaaaccaactttgtcaaaaaagaaatccatatggacctccgtcg-----gaagcgtatctaaccaaacagaaccctgaatggcgttagaaggttgtgca |
15952209 |
T |
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| Q |
140 |
acaatttgtagtagcaaatcatcagcatttgcatctaccaattgaaatccatcgtgctccttattcaactttgatactaagcatcccaaatttgcattga |
239 |
Q |
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| T |
15952210 |
acaatttgcagtagcaaatcatcagcatttgcatctaccaattgaaatccatcgtgttccttattcaactttgatactaagcatcccaaatttgcattga |
15952309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 26046247 - 26046131
Alignment:
| Q |
125 |
tgagaaggttgtgcaacaatttgtagtagcaaatcatcagcatttgcatctaccaattgaaatccatcgtgctccttattcaactttgatactaagcatc |
224 |
Q |
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||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| |
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| T |
26046247 |
tgagaaggttgtgcaacaatttgcagtatcaaatcataagcatttgcatctaccaattgaaatccatggaggtccttattcaactttgatactaagcatc |
26046148 |
T |
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| Q |
225 |
ccaaatttgcattgaac |
241 |
Q |
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|||| |||||||||||| |
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| T |
26046147 |
ccaattttgcattgaac |
26046131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 20367677 - 20367747
Alignment:
| Q |
3 |
aaacagactacaacagagtaagaaaacctgtagttaggaaaaccaactttgtcacaaaagaaatccatatg |
73 |
Q |
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||||||||||||||||| |||| |||| |||||||||| ||||||||| | ||| ||||||||||||||| |
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| T |
20367677 |
aaacagactacaacagactaaggaaacatgtagttaggcaaaccaactctttcatgaaagaaatccatatg |
20367747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 15742 - 15788
Alignment:
| Q |
27 |
aacctgtagttaggaaaaccaactttgtcacaaaagaaatccatatg |
73 |
Q |
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| T |
15742 |
aacctgtagttaggcaaaccaactatgtcacgaaagaaatccatatg |
15788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 99508 - 99462
Alignment:
| Q |
27 |
aacctgtagttaggaaaaccaactttgtcacaaaagaaatccatatg |
73 |
Q |
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|||||||||||||| ||||||||| |||||| ||||||||||||||| |
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| T |
99508 |
aacctgtagttaggcaaaccaactctgtcacgaaagaaatccatatg |
99462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 1633192 - 1633144
Alignment:
| Q |
21 |
taagaaaacctgtagttaggaaaaccaactttgtcacaaaagaaatcca |
69 |
Q |
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|||||||||||||||||||| ||||||||| | |||| ||||||||||| |
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| T |
1633192 |
taagaaaacctgtagttaggcaaaccaactctatcacgaaagaaatcca |
1633144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 1538176 - 1538213
Alignment:
| Q |
90 |
gaagcgtgtctaaccaaacagaaccctaaatggcgtga |
127 |
Q |
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| T |
1538176 |
gaagcgtgtctaaccaaacagaaccctgaatggtgtga |
1538213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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