View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_85 (Length: 235)
Name: NF1342_low_85
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_85 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 845292 - 845395
Alignment:
| Q |
1 |
tgacaatctacatccgcgtgagagagaccagcaagagatgttacagtaatctgtaaaaagataataaataaactg-ttagcacgtcattattcatttaat |
99 |
Q |
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| T |
845292 |
tgacaatctacatccgcgtgagagagaccagcaagagatgttacagtaatctgtaaaaagataataaataaactgtttagcacgtcattattcatttaat |
845391 |
T |
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| Q |
100 |
ctaa |
103 |
Q |
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|||| |
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| T |
845392 |
ctaa |
845395 |
T |
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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 845423 - 845500
Alignment:
| Q |
137 |
tagcccgccttcaaagatttgtgatctgtatcatcatcataatcaggtagggcacctcttacctacaaaagtttgaag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
845423 |
tagcccgccttcaaagatttgtgatctgtatcatcatcataatcaggtagggcacctcttacctacaaaagtttgaag |
845500 |
T |
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