View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_90 (Length: 211)
Name: NF1342_low_90
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_90 |
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Alignment Details
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 40094034 - 40094147
Alignment:
| Q |
1 |
cacgtgccacagtcgtttttgaaaccaaacggaaacactcttgtattgtttgaggaaagtggtggtgatccaacacaaatatcttttgctacaaaacagc |
100 |
Q |
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| T |
40094034 |
cacgtgccacagtcgtttttgaaaccaaatggaaacactcttgtattgtttgaggaaagtggtggtgatccaacacaaatatcttttgctacaaaacaga |
40094133 |
T |
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| Q |
101 |
taggaagtgtgtgt |
114 |
Q |
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|||||||||||||| |
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| T |
40094134 |
taggaagtgtgtgt |
40094147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 40063414 - 40063515
Alignment:
| Q |
13 |
tcgtttttgaaaccaaacggaaacactcttgtattgtttgaggaaagtggtggtgatccaacacaaatatcttttgctacaaaacagctaggaagtgtgt |
112 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| |||| ||| |
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| T |
40063414 |
tcgtttttgaaaccaaacggcaacactcttgtattgtttgaggaaaatggcggtgatccaacacaaatagcttttgctacaaaacagctagaaagtttgt |
40063513 |
T |
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| Q |
113 |
gt |
114 |
Q |
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|| |
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| T |
40063514 |
gt |
40063515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 40081764 - 40081866
Alignment:
| Q |
13 |
tcgtttttgaaaccaaacggaaacactcttgtattgtttgaggaaagtggtggtgatccaacacaaatatcttttgctacaaaacagctaggaagtgtgt |
112 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| || |||||||||||||||||||||||||| | |||||||| |
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| T |
40081764 |
tcgtttttgaaaccaaacggcaacactcttgtattgtttgaggaaaatggcggtgatccgacccaaatatcttttgctacaaaacagctggaaagtgtgt |
40081863 |
T |
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| Q |
113 |
gtt |
115 |
Q |
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||| |
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| T |
40081864 |
gtt |
40081866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 22012391 - 22012310
Alignment:
| Q |
34 |
aacactcttgtattgtttgaggaaagtggtggtgatccaacacaaatatcttttgctacaaaacagctaggaagtgtgtgtt |
115 |
Q |
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|||||| ||||||||||||||||||| || || || || ||| |||||||||||| |||||||||| ||| ||||||||||| |
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| T |
22012391 |
aacacttttgtattgtttgaggaaagcggaggcgaccctacaaaaatatcttttggtacaaaacagatagaaagtgtgtgtt |
22012310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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