View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13430_high_1 (Length: 536)

Name: NF13430_high_1
Description: NF13430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13430_high_1
NF13430_high_1
[»] chr4 (2 HSPs)
chr4 (19-522)||(52364427-52364922)
chr4 (19-524)||(42492263-42492761)
[»] chr1 (4 HSPs)
chr1 (19-524)||(39345565-39346065)
chr1 (413-523)||(22908135-22908246)
chr1 (414-524)||(6911207-6911316)
chr1 (413-518)||(21529753-21529859)
[»] chr5 (3 HSPs)
chr5 (19-524)||(9935417-9935914)
chr5 (19-524)||(6696371-6696865)
chr5 (413-502)||(5665710-5665800)
[»] chr7 (6 HSPs)
chr7 (311-450)||(9972979-9973118)
chr7 (413-516)||(13323823-13323927)
chr7 (488-524)||(9972950-9972986)
chr7 (414-523)||(33378556-33378664)
chr7 (414-522)||(27214096-27214203)
chr7 (414-522)||(48160814-48160921)
[»] chr2 (4 HSPs)
chr2 (101-302)||(21935843-21936034)
chr2 (393-501)||(21935703-21935811)
chr2 (338-376)||(21935804-21935842)
chr2 (49-81)||(21936048-21936080)
[»] chr8 (3 HSPs)
chr8 (413-523)||(10644178-10644289)
chr8 (413-518)||(17506909-17507015)
chr8 (414-524)||(32661175-32661284)
[»] chr6 (1 HSPs)
chr6 (413-518)||(21506151-21506257)
[»] scaffold0697 (1 HSPs)
scaffold0697 (413-518)||(710-815)
[»] chr3 (1 HSPs)
chr3 (413-477)||(27426914-27426979)


Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 522
Target Start/End: Complemental strand, 52364922 - 52364427
Alignment:
Q  19 taatactaacagcaattgcatcaccagtgtataaataatagagtacgtataagttcttgacccnnnnnnnnnnnnnnnnnngttacgtataagttgcttt 118  Q
    |||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||    
T  52364922 taatactaaatgcaattgcatcaccggtgtataaataatagagtacgtataagttcttgacccaaaaaaaaaaa--------ttacgtataagttgcttt 52364831  T
Q  119 attgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcg-attgacatcatttacatgtggttacttgct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52364830 attgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcggattgacatcatttacatgtggttacttgct 52364731  T
Q  218 gattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttcttattaaacgggtaaaattggaat 317  Q
    |||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52364730 gattgatttccttgaatgcttcttt-gtagaattttctttttccagttcatgtttaattagttggttttctatttcttattaaacgggtaaaattggaat 52364632  T
Q  318 tacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaactatttaac 417  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  52364631 tacatcattcattttcaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaagaacaaaactatttaac 52364532  T
Q  418 caaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaacaaacg 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  52364531 caaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagataattcctgggaataaattgtgtatccatgaaacaaacg 52364432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 524
Target Start/End: Original strand, 42492263 - 42492761
Alignment:
Q  19 taatactaacagcaattgcatcaccagtgtataaataatagagtacgtataagttcttgacccnnnnnnnnnnnnnnnnnngttacgtataagttgcttt 118  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||                   ||||| ||||||||||||    
T  42492263 taatactaaatgcaattgcatcactagtgtataaataatagagtacgtataagttcttgacccaaaaaaaaataa-------ttacgaataagttgcttt 42492355  T
Q  119 attgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcg-attgacatcatttacatgtggttacttgct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42492356 attgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcgtattgacatcatttacatgtggttacttgct 42492455  T
Q  218 gattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttcttattaaacgggtaaaattggaat 317  Q
    ||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42492456 gattgatttccttgaatgtttcttt-gtagaattttcttattccagttcatgtttaattagttggttttctatttcttattaaacgggtaaaattggaat 42492554  T
Q  318 tacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaactatttaac 417  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42492555 tacatcattcattcccaggaacaagttttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaactatttaac 42492654  T
Q  418 caaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaacaaacg 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  42492655 caaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagataattcctgagaataaattgtgtatccatgaaacaaacg 42492754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 524
Target Start/End: Original strand, 39345565 - 39346065
Alignment:
Q  19 taatactaacagcaattgcatcaccagtgtataaataatagagtacgtataagttcttgacccnnnnnnnnnnnnnnnnnngttacgtataagttgcttt 118  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||    
T  39345565 taatactaaatgcaattgcatcaccagtgtataaataatagagtacgtataagttcttgacccaaaaaaaaaaaaaa-----ttacgtataagttgcttt 39345659  T
Q  119 attgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcg-attgacatcatttacatgtggttacttgct 217  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  39345660 attgtctacatggactagactccattttcgtaaagcatatgcataaaaataacaatgcagaaaggatcggattgacatcatttacatgtggttacttgct 39345759  T
Q  218 gattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttcttattaaacgggtaaaattggaat 317  Q
    |||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39345760 gattgatttccttgaatgcttcttt-gtagaattttctttttccagttcatgtttaattagttggttttctatttcttattaaacgggtaaaattggaat 39345858  T
Q  318 tacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaactatttaac 417  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39345859 tacatcattcattttcaggaacaaattttgcaatacaaacacatttcaattattctcagtttcttttttaataaaattcccaggaacaaaactatttaac 39345958  T
Q  418 caaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaacaaacg 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||    
T  39345959 caaacacttttttcatattttcctaggaataaaaatcacacctttatattccagaaaaagataattcctgggaataaattgtgtatccatgaaacaaacg 39346058  T
Q  518 cacccta 524  Q
    |||||||    
T  39346059 cacccta 39346065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 523
Target Start/End: Original strand, 22908135 - 22908246
Alignment:
Q  413 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 511  Q
    |||| |||||||||||||| |||||||||| ||||||||| |   ||||| | |||||  |||||| |||| |||||||||||||| |||| || | |||    
T  22908135 ttaatcaaacacttttttctatattttcctgggaataaaattttaaccttcacattcctaggaaagttgatacctgggaataaattttgtaaccctcaaa 22908234  T
Q  512 caaacgcaccct 523  Q
    ||||||| ||||    
T  22908235 caaacgccccct 22908246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 524
Target Start/End: Complemental strand, 6911316 - 6911207
Alignment:
Q  414 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 513  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  6911316 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttggtaaacttgaaaca 6911218  T
Q  514 aacgcacccta 524  Q
    ||| |||||||    
T  6911217 aacacacccta 6911207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 518
Target Start/End: Complemental strand, 21529859 - 21529753
Alignment:
Q  413 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 511  Q
    ||||||||||||||||||| ||||||| || ||||||||| |   ||||| | ||||| ||||||| |||| |||| ||||| ||| |||| || | |||    
T  21529859 ttaaccaaacacttttttctatatttttctgggaataaaattttaaccttcacattcctgggaaagttgatacctgagaatagattttgtaaccctcaaa 21529760  T
Q  512 caaacgc 518  Q
    |||||||    
T  21529759 caaacgc 21529753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 524
Target Start/End: Complemental strand, 9935914 - 9935417
Alignment:
Q  19 taatactaacagcaattgcatcaccagtgtataaataatagagtacgtataagttcttgacccnnnnnnnnnnnnnnnnnngttacgtataagttgcttt 118  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||                   ||||| ||||||||||||    
T  9935914 taatactaaatgcaattgcatcactagtgtataaataatagagtacgtataagttcttgacccaaaaaaaaaaa--------ttacgaataagttgcttt 9935823  T
Q  119 attgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcg-attgacatcatttacatgtggttacttgct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9935822 attgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcgtattgacatcatttacatgtggttacttgct 9935723  T
Q  218 gattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttcttattaaacgggtaaaattggaat 317  Q
    ||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9935722 gattgatttccttgaatgtttcttt-gtagaattttcttattccagttcatgtttaattagttggttttctatttcttattaaacgggtaaaattggaat 9935624  T
Q  318 tacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaactatttaac 417  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9935623 tacatcattcattcccaggaacaagttttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaactatttaac 9935524  T
Q  418 caaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaacaaacg 517  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||| |||||||||    
T  9935523 caaacacttttttcatattttcctaagaataaaaatcacacctttatatttcagggaaagataattcctaggaataaattgtgtatccataaaacaaacg 9935424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 524
Target Start/End: Original strand, 6696371 - 6696865
Alignment:
Q  19 taatactaacagcaattgcatcaccagtgtataaataatagagtacgtataagttcttgacccnnnnnnnnnnnnnnnnnngttacgtataagttgcttt 118  Q
    |||||||||  ||||||||||||| | ||||||||||||||||||||||||||||||||||||                   ||||| |||||||| |||    
T  6696371 taatactaaatgcaattgcatcactactgtataaataatagagtacgtataagttcttgacccaaaaaaaaaaa--------ttacgaataagttgtttt 6696462  T
Q  119 attgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcg-attgacatcatttacatgtggttacttgct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6696463 attgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcgtattgacatcatttacatgtggttacttgct 6696562  T
Q  218 gattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttcttattaaacgggtaaaattggaat 317  Q
    ||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  6696563 gattgatttccttgaatgtttcttt-gtagaattttcttattccagttcatgtttaattagttggttttctatttcttattaaacgggta---ttggaat 6696658  T
Q  318 tacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaactatttaac 417  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6696659 tacatcattcattcccaggaacaagttttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaactatttaac 6696758  T
Q  418 caaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaacaaacg 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  6696759 caaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagataattcctaggaataaattgtgtatccatgaaacaaacg 6696858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 413 - 502
Target Start/End: Complemental strand, 5665800 - 5665710
Alignment:
Q  413 ttaaccaaacacttttttca-tattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgta 502  Q
    |||||||||||||||||||  ||||||||| |||||||||||  | |||||| ||||| ||| ||| | ||||||||||||||||| ||||    
T  5665800 ttaaccaaacacttttttctgtattttcctgggaataaaaatttcccctttacattcctgggtaagttaattcctgggaataaattttgta 5665710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 3e-68; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 311 - 450
Target Start/End: Complemental strand, 9973118 - 9972979
Alignment:
Q  311 ttggaattacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaact 410  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9973118 ttggaattacatcattcatctccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaact 9973019  T
Q  411 atttaaccaaacacttttttcatattttcctaggaataaa 450  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  9973018 atttaaccaaacacttttttcatatttttctaggaataaa 9972979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 413 - 516
Target Start/End: Complemental strand, 13323927 - 13323823
Alignment:
Q  413 ttaaccaaacacttttttca-tattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 511  Q
    |||||||||||||||||||  |||||||||||||||||||||  | |||||| ||||| ||| ||| | ||||||||||||||||| |||| || | |||    
T  13323927 ttaaccaaacacttttttctgtattttcctaggaataaaaatttcccctttacattcctgggtaagttaattcctgggaataaattttgtaaccctcaaa 13323828  T
Q  512 caaac 516  Q
    |||||    
T  13323827 caaac 13323823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 488 - 524
Target Start/End: Complemental strand, 9972986 - 9972950
Alignment:
Q  488 ggaataaattgtgtatccatgaaacaaacgcacccta 524  Q
    |||||||||||||||||||||||||||||||||||||    
T  9972986 ggaataaattgtgtatccatgaaacaaacgcacccta 9972950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 523
Target Start/End: Complemental strand, 33378664 - 33378556
Alignment:
Q  414 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 513  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  33378664 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttggtaaacttgaaaca 33378566  T
Q  514 aacgcaccct 523  Q
    ||| ||||||    
T  33378565 aacacaccct 33378556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 522
Target Start/End: Original strand, 27214096 - 27214203
Alignment:
Q  414 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 513  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  27214096 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttggtaaacttgaaaca 27214194  T
Q  514 aacgcaccc 522  Q
    ||| |||||    
T  27214195 aacacaccc 27214203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 522
Target Start/End: Original strand, 48160814 - 48160921
Alignment:
Q  414 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 513  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  48160814 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttagtaaacttgaaaca 48160912  T
Q  514 aacgcaccc 522  Q
    ||| |||||    
T  48160913 aacacaccc 48160921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 8e-50; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 101 - 302
Target Start/End: Complemental strand, 21936034 - 21935843
Alignment:
Q  101 ttacgtataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatc-------gattgac 193  Q
    |||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  21936034 ttacgtttaagttgctttattgtctacatgaactacgctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcggattcggattgac 21935935  T
Q  194 atcatttacatgtggttacttgctgattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttc 293  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||              |||||| | ||||||||||||||||||||||||||||||    
T  21935934 atcatttacatgtggttacttgctgattgatttc--tgaatgtttct--------------ttttccga-ttcatgtttaattagttggttttctatttc 21935852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 393 - 501
Target Start/End: Complemental strand, 21935811 - 21935703
Alignment:
Q  393 attcccaggaacaaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaat 492  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  21935811 attcccaggaacaaaactatttaaccaaacacttttttcatatttttctagaaataaaaatcacacctttatatttcagggaaagataattcctgagaat 21935712  T
Q  493 aaattgtgt 501  Q
    |||||||||    
T  21935711 aaattgtgt 21935703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 21935842 - 21935804
Alignment:
Q  338 acaaattttgcaatacaaacacatttcaattattcccag 376  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  21935842 acaaattttgcaatccaaacacatttcaattattcccag 21935804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 21936080 - 21936048
Alignment:
Q  49 ataaataatagagtacgtataagttcttgaccc 81  Q
    |||||||||||||||||||||||||||||||||    
T  21936080 ataaataatagagtacgtataagttcttgaccc 21936048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 523
Target Start/End: Original strand, 10644178 - 10644289
Alignment:
Q  413 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 511  Q
    ||||||||||||||||||| |||||||||| ||||||||| |   ||||| ||||||| || |||| |||| |||||||||| ||| |||| || | |||    
T  10644178 ttaaccaaacacttttttctatattttcctgggaataaaattttaaccttcatattcctggaaaagttgatacctgggaatagattttgtaaccctcaaa 10644277  T
Q  512 caaacgcaccct 523  Q
    ||||||| ||||    
T  10644278 caaacgccccct 10644289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 518
Target Start/End: Complemental strand, 17507015 - 17506909
Alignment:
Q  413 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 511  Q
    ||||||||||||||||||| ||||||| || ||||||||| |   ||||| | ||||| ||||||| |||| |||||||||| ||| |||| || | |||    
T  17507015 ttaaccaaacacttttttctatatttttctgggaataaaattttaaccttcacattcctgggaaagttgatacctgggaatagattttgtaaccctcaaa 17506916  T
Q  512 caaacgc 518  Q
    |||||||    
T  17506915 caaacgc 17506909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 524
Target Start/End: Original strand, 32661175 - 32661284
Alignment:
Q  414 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 513  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  32661175 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttagtaaacttgaaaca 32661273  T
Q  514 aacgcacccta 524  Q
    ||| |||||||    
T  32661274 aacacacccta 32661284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 518
Target Start/End: Original strand, 21506151 - 21506257
Alignment:
Q  413 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 511  Q
    ||||||||||||||||||| |||||||||||||||||||| |   ||||| | ||||| || |||| |||| |||||||||  ||| |||| || | |||    
T  21506151 ttaaccaaacacttttttctatattttcctaggaataaaattttaaccttcacattcctggaaaagttgatacctgggaatcgattttgtaaccctcaaa 21506250  T
Q  512 caaacgc 518  Q
    |||||||    
T  21506251 caaacgc 21506257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 518
Target Start/End: Complemental strand, 815 - 710
Alignment:
Q  413 ttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaac 512  Q
    |||||||||||||||||  ||||||| || ||||||||| |   ||||| | ||||| ||||||| |||| |||| ||||| ||| |||| || | ||||    
T  815 ttaaccaaacactttttctatatttttctgggaataaaattttaaccttcacattcctgggaaagttgatacctgagaatagattttgtaaccctcaaac 716  T
Q  513 aaacgc 518  Q
    ||||||    
T  715 aaacgc 710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 477
Target Start/End: Original strand, 27426914 - 27426979
Alignment:
Q  413 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaag 477  Q
    ||||||||||||||||||| |||||||||| ||||||||| |   ||||| | |||||||||||||    
T  27426914 ttaaccaaacacttttttctatattttcctcggaataaaattttaaccttcacattccagggaaag 27426979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University