View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13430_high_2 (Length: 473)
Name: NF13430_high_2
Description: NF13430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13430_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 41964268 - 41964501
Alignment:
| Q |
17 |
catcttccatgttggtgatgcctaaaataatgacgaatatatactatgaaaaatgctaacgattgcctctgacactctttaaacaccttaagtagtaagc |
116 |
Q |
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| T |
41964268 |
catcttccatgttggtgatgcctaaaataatgacgaatatatactaagaaaaatgctaacgagtgcatgtgacactctttaaacaccttaagtagtaagc |
41964367 |
T |
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| Q |
117 |
ttaggagaagaaattaaagcttaatctaattaatagtaggcctatttgatttagtaccttgtgactccacgatacattgatgcaccccttgaaaatccac |
216 |
Q |
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| T |
41964368 |
ttaggagaagaaattaaagtttaatctaattaatagtaggcctatttgatttagtaccttgtgactccacgatacattgatgcaccccttgaaaatccac |
41964467 |
T |
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| Q |
217 |
tgctctttctgcaatttatcaacagattgatgaa |
250 |
Q |
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| T |
41964468 |
tgctctttctgcaatttatcaacagattgatgaa |
41964501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 375 - 462
Target Start/End: Original strand, 41964621 - 41964708
Alignment:
| Q |
375 |
gtatatctcatggctgattccaaatataaaatgaaattaattaccttcttatggcggcaacaaattctagtcttgtcatgtgcttcat |
462 |
Q |
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| T |
41964621 |
gtatatctcatggctgattccaaatataaaatgaaattaattaccttcttatggcggcaacaaattctagtcttgtcatgtgcttcat |
41964708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 301
Target Start/End: Original strand, 41964513 - 41964547
Alignment:
| Q |
267 |
aggggaagattgatgaaatttattgaaccacttca |
301 |
Q |
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| T |
41964513 |
aggggaagattgatgaaatttattgaaccacttca |
41964547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 462
Target Start/End: Original strand, 24562461 - 24562515
Alignment:
| Q |
408 |
aaattaattaccttcttatggcggcaacaaattctagtcttgtcatgtgcttcat |
462 |
Q |
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| T |
24562461 |
aaattagttaccttctaatagaggcaacaaattcttgtcttgtcatgtgcttcat |
24562515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 3270623 - 3270662
Alignment:
| Q |
188 |
atacattgatgcaccccttgaaaatccactgctctttctg |
227 |
Q |
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| T |
3270623 |
atactttgatgcacctcttgaaaatccactgctctttctg |
3270662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 4845937 - 4845979
Alignment:
| Q |
188 |
atacattgatgcaccccttgaaaatccactgctctttctgcaa |
230 |
Q |
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| T |
4845937 |
atacattgaagcaccccttgaaaaaccactactctttctgcaa |
4845979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 47753814 - 47753773
Alignment:
| Q |
189 |
tacattgatgcaccccttgaaaatccactgctctttctgcaa |
230 |
Q |
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| T |
47753814 |
tacattgaagcaccccttgagaatccactgctttttctgcaa |
47753773 |
T |
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