View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13430_low_3 (Length: 407)
Name: NF13430_low_3
Description: NF13430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13430_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 9 - 391
Target Start/End: Complemental strand, 1933718 - 1933336
Alignment:
| Q |
9 |
ttcttcggtatggcaaaagatgttatcacataaaatgctattatgacatggtaagaaaaacataaagttcttctcgaagtttcttgattgaacaagttaa |
108 |
Q |
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| T |
1933718 |
ttcttcggtatggcaaaagatgttatcacataaaatgctattatgacatggtaagaaaaacataaagttcttctcgaagtttcttgattgaacaagttaa |
1933619 |
T |
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| Q |
109 |
ttcatttttatattgaacaagttctgtaattttgtgcttcatatagcactcataattttattatcatttcagtcttgcagctacattggatataaacttg |
208 |
Q |
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| T |
1933618 |
ttcatttttatattgaacaagttctgtaattttgtgcttcatatagcactcataattttattatcattttagtcttgcagctacattggatataaaattg |
1933519 |
T |
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| Q |
209 |
catgttggaaattataacattgccgaattggctatagttcctgataattctaatcccaaccaacccagctgctatactacttaatctagtattttgcact |
308 |
Q |
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||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1933518 |
catgttggaaattataacattgccgaagtggctaaatttcctgataattctaatcccaaccaacccagctgctatactacttaatctagtattttgcact |
1933419 |
T |
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| Q |
309 |
attaactagtcctgtttaatacatgtaattatattgccattccattaaaaagtttctgtaatttcatcatcctcatttgaggt |
391 |
Q |
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| T |
1933418 |
attaactagtcctgtttaatacatgtaattatattgccattccattaaaaagtttctgtaatttcatcatcctcatttgaggt |
1933336 |
T |
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