View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13430_low_4 (Length: 390)
Name: NF13430_low_4
Description: NF13430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13430_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 6 - 374
Target Start/End: Original strand, 29677622 - 29677990
Alignment:
| Q |
6 |
ccaaagtatctgggtgcttgtaagcttgaccaggtagtttttccaatctaacatacattattcttttagtttattgcaagttgtgctacatagtttagac |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29677622 |
ccaaagtatctgggtgcttgtaagcttgaccaggtagtttttccaatctaacatacattattcttttagtttattgcaagttgtgctacatggtttagac |
29677721 |
T |
|
| Q |
106 |
attttcattgtagttaattttgagtttcctttgttttagttgattggtacttttgaaatatgcttactgcctggagtctctttggaaaacactttattag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29677722 |
attttcattgtagttaattttgagtttcctttgttttagttgattggtacttttgaaatatgcttactgcctggagtctctttggaaaacactttattag |
29677821 |
T |
|
| Q |
206 |
attgagattgataaacgcttcttcataacatcagtgattttcttgaagagtttatctaagctaacatatattattctttatagtagattttggatttgct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29677822 |
attgagattgataaacgcttcttcataacatcagtgattttcttgaagagtttatctaagctaacatatattattctttatagtagatttaggatttgct |
29677921 |
T |
|
| Q |
306 |
atgcgattttctatataaatcattggtgatttgcttagacaatgaactgatcttgacgagaagaactgt |
374 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29677922 |
atgcgattttctatataaatcattggtgatttgcttagacaatgaactgatcttgacgagaagaactgt |
29677990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 7 - 256
Target Start/End: Original strand, 28126048 - 28126297
Alignment:
| Q |
7 |
caaagtatctgggtgcttgtaagcttgaccaggtagtttttccaatctaacatacattattcttttagtttattgcaagttgtgctacatagtttagaca |
106 |
Q |
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||||||||| ||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
28126048 |
caaagtatccgggtgctcttaagcttgagcaggtagttattccaatctaacatacattattcttttagtttattgcaagttgtgctacacagtttagata |
28126147 |
T |
|
| Q |
107 |
ttttcattgtagttaattttgagtttcctttgttttagttgattggtacttttgaaatatgcttactgcctggagtctctttggaaaacactttattaga |
206 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||| |||| |
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| T |
28126148 |
ttttcattgtagttaattttgactttcctttgttttagttgattggtacttttgaaatatgcttactgcccagagtcactttggaaaacattttactaga |
28126247 |
T |
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| Q |
207 |
ttgagattgataaacgcttcttcataacatcagtgattttcttgaagagt |
256 |
Q |
| |
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| |||||||| |||||||||||||||| |||||||||||||||||||||| |
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|
| T |
28126248 |
tggagattgacaaacgcttcttcataatatcagtgattttcttgaagagt |
28126297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 29678139 - 29678255
Alignment:
| Q |
114 |
tgtagttaattttgagtttcctttgttttagttgattggtacttttgaaatatgcttactgcctggagtctctttggaaaacactttattagattgagat |
213 |
Q |
| |
|
|||||||| || ||||||||| || | || ||||| |||||||||||||| |||| ||||||||| ||| | |||||| ||| ||||| |||||||||| |
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| T |
29678139 |
tgtagttacttctgagtttcccttttctttgttgactggtacttttgaaacatgcctactgcctgaagtttatttggacaactgtttatcagattgagat |
29678238 |
T |
|
| Q |
214 |
tgataaacgcttcttca |
230 |
Q |
| |
|
|||||||| ||| |||| |
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|
| T |
29678239 |
tgataaacacttgttca |
29678255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 43946806 - 43946929
Alignment:
| Q |
95 |
atagtttagacattttcattgtagttaattttgagtttcctttgttttagttgattggtacttttgaaatatgcttactgcctggagtctctttggaaaa |
194 |
Q |
| |
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||||||||| | ||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||| || || || |||| | ||||||||| |
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|
| T |
43946806 |
atagtttaggccctttcattgtagttaattttgagtctcctg-------gttgagtggtactattgaaatatgcctattgtctcgagtgtatttggaaaa |
43946898 |
T |
|
| Q |
195 |
cactttattagattgagattgataaacgctt |
225 |
Q |
| |
|
|| ||||||||| ||| || |||||| |||| |
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|
| T |
43946899 |
cattttattagactgaaatcgataaatgctt |
43946929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 20873922 - 20873811
Alignment:
| Q |
122 |
attttgagtttcctttgttttagttgattggtacttttgaaatatgcttactgcctggagtctctttggaaaacactttattagattgagattgataaac |
221 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| || |||| |||| ||||||||| || |||||| ||| ||||||| ||||||| |||| |
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| T |
20873922 |
attttgagcttcctttgttttagttgtgtggtactttggacatatttctactttctggagtctacttttaaaacatttttttagatttagattgaaaaac |
20873823 |
T |
|
| Q |
222 |
gcttcttcataa |
233 |
Q |
| |
|
|||||||||||| |
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| T |
20873822 |
gcttcttcataa |
20873811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 19656942 - 19656903
Alignment:
| Q |
108 |
tttcattgtagttaattttgagtttcctttgttttagttg |
147 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
19656942 |
tttcattatagttgattttgagtttcctttgttttagttg |
19656903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 33838834 - 33838802
Alignment:
| Q |
116 |
tagttaattttgagtttcctttgttttagttga |
148 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
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|
| T |
33838834 |
tagttaattttgagtttcctttgttgtagttga |
33838802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 33842784 - 33842752
Alignment:
| Q |
116 |
tagttaattttgagtttcctttgttttagttga |
148 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
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|
| T |
33842784 |
tagttaattttgagtttcctttgttgtagttga |
33842752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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