View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13430_low_5 (Length: 323)
Name: NF13430_low_5
Description: NF13430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13430_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 8165149 - 8164914
Alignment:
| Q |
1 |
aagtcaaaagactaatgcatatagatcctaccgctcagagttctcctatcagactcgagagattaatctctgcagttgtgtatgctgaggatagctcata |
100 |
Q |
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| T |
8165149 |
aagtcaaaagactaatgcatatagatcctaccgctcaaagttatcctatcagactcgagagattaatctctacagttgtgtatgttgaggatagctcata |
8165050 |
T |
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| Q |
101 |
tacaccaaaaaatatatatccttcaaagctcaaagatttccaagggttagggcaacatacactagaaatttcacaaggaaactaccaagaagagaatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8165049 |
tacaccaaaaaatatatatccttcaaagctcaaagatttccaagggttagggcaacatacactagaaatttcacaaggaaactaccaagaagagaatttt |
8164950 |
T |
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| Q |
201 |
gttcaaaaagttgaaataatgtacttgagagagaga |
236 |
Q |
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| T |
8164949 |
gctcaaaaagttgaaacaatgtacttgagagagaga |
8164914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 8164898 - 8164864
Alignment:
| Q |
238 |
attaataaagattgtttatttgagtggatattttt |
272 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
8164898 |
attaataaagattgtttatttgagtggatattttt |
8164864 |
T |
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