View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13430_low_6 (Length: 300)

Name: NF13430_low_6
Description: NF13430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13430_low_6
NF13430_low_6
[»] chr7 (1 HSPs)
chr7 (10-281)||(45622168-45622439)
[»] chr8 (1 HSPs)
chr8 (10-281)||(22603688-22603959)
[»] chr1 (1 HSPs)
chr1 (10-273)||(20188504-20188748)
[»] chr3 (2 HSPs)
chr3 (10-272)||(15213957-15214200)
chr3 (10-272)||(15253176-15253419)
[»] chr6 (2 HSPs)
chr6 (96-165)||(24630537-24630606)
chr6 (225-267)||(22845740-22845782)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 45622439 - 45622168
Alignment:
Q  10 aagaaaattaaggaaagaaaagtgaacgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtca 109  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45622439 aagaaaattaaggatagaaaagtgagcgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtca 45622340  T
Q  110 acaacaacatttaattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgttgtacataaaaacccga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45622339 acaacaacatttaattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgtcgtacataaaaacccga 45622240  T
Q  210 catgcaagcactgaagttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgcgacgcgat 281  Q
    | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45622239 cctacaagcaccgaagttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgcgacccgat 45622168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 22603959 - 22603688
Alignment:
Q  10 aagaaaattaaggaaagaaaagtgaacgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtca 109  Q
    ||||| ||||||||||||||| |||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  22603959 aagaatattaaggaaagaaaattgagtgaaaagctaattaagaaacctgttatgagcactaattgtttaaggaaccattcattgtggaagacaaaagtca 22603860  T
Q  110 acaacaacatttaattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgttgtacataaaaacccga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22603859 acaacaacatttaattgctcaaaagaaacaacatttctctagggattccaatcatcggtcaccaaatcctttctgaagtgtgtcgtacataaaaacccga 22603760  T
Q  210 catgcaagcactgaagttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgcgacgcgat 281  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  22603759 cctgcaagcactgaagttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgtgacacgat 22603688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 273
Target Start/End: Complemental strand, 20188748 - 20188504
Alignment:
Q  10 aagaaaattaaggaaagaaaagtgaacgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtca 109  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||            ||||  ||||||||||    
T  20188748 aagaaaattaaggaaagaaaagtgagtgaaaagctaattaagaaacctgttatgaacactaactgtttaagg------------tggaaaacaaaagtca 20188661  T
Q  110 acaacaacatttaattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgttgtacataaaaacccga 209  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20188660 acaacatcatttaattgatcaaaagaaacaacatttctctaggaatttcaatcatcggtcaccaaatcctttctgaagtgtgtcgtacataaaaacccga 20188561  T
Q  210 catgcaagcactgaagttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgc 273  Q
      ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  20188560 tctgcaagcactgaag-------ttgtattttacctgttgcacattaccctagaaaaagaatgc 20188504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 15213957 - 15214200
Alignment:
Q  10 aagaaaattaaggaaagaaaagtgaacgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtca 109  Q
    |||||||||||||| |||||||||| | |||||||||||||||||| |||||||||||||||||||||||||            |||| |||||||||||    
T  15213957 aagaaaattaaggatagaaaagtgagcaaaaagctaattaagaaacatgttatgagcactaactgtttaagg------------tggaagacaaaagtca 15214044  T
Q  110 acaacaacatttaattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgttgtacataaaaacccga 209  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  15214045 acaacatcatttcattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgtcgttcataaaaacccga 15214144  T
Q  210 catgcaagcactgaagttggtgtttgtattttacctgttgcacattaccctagaaaaagaatg 272  Q
    | ||| ||||||||||       |||||||||||||||||||| |||||||||||||||||||    
T  15214145 cctgctagcactgaag-------ttgtattttacctgttgcacgttaccctagaaaaagaatg 15214200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 15253176 - 15253419
Alignment:
Q  10 aagaaaattaaggaaagaaaagtgaacgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtca 109  Q
    |||||||||||||| |||||||||| | |||||||||||||||||| |||||||||||||||||||||||||            |||| |||||||||||    
T  15253176 aagaaaattaaggatagaaaagtgagcaaaaagctaattaagaaacatgttatgagcactaactgtttaagg------------tggaagacaaaagtca 15253263  T
Q  110 acaacaacatttaattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgttgtacataaaaacccga 209  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  15253264 acaacatcatttcattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgtcgttcataaaaacccga 15253363  T
Q  210 catgcaagcactgaagttggtgtttgtattttacctgttgcacattaccctagaaaaagaatg 272  Q
    | ||| ||||||||||       |||||||||||||||||||| |||||||||||||||||||    
T  15253364 cctgctagcactgaag-------ttgtattttacctgttgcacgttaccctagaaaaagaatg 15253419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 24630606 - 24630537
Alignment:
Q  96 gatgacaaaagtcaacaacaacatttaattgctcaaaagaaacaacatttctctaggaattccaatcatc 165  Q
    |||| |||||||||  | ||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  24630606 gatgccaaaagtcagaaccaacattgaattgctcaaaagaaacaacatttatctaggaattccaatcatc 24630537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 22845740 - 22845782
Alignment:
Q  225 gttggtgtttgtattttacctgttgcacattaccctagaaaaa 267  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||    
T  22845740 gttggtgtttgtattttacttgttgcaccttaccctagtaaaa 22845782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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