View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13430_low_8 (Length: 284)

Name: NF13430_low_8
Description: NF13430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13430_low_8
NF13430_low_8
[»] chr1 (3 HSPs)
chr1 (1-266)||(40643233-40643495)
chr1 (57-136)||(35594797-35594876)
chr1 (4-33)||(35594870-35594899)
[»] scaffold1303 (2 HSPs)
scaffold1303 (57-136)||(1867-1946)
scaffold1303 (4-33)||(1844-1873)
[»] chr8 (2 HSPs)
chr8 (57-136)||(22220813-22220892)
chr8 (1-33)||(22220787-22220819)
[»] chr4 (2 HSPs)
chr4 (57-136)||(1834549-1834628)
chr4 (1-33)||(1834523-1834555)
[»] chr2 (2 HSPs)
chr2 (57-136)||(18797825-18797904)
chr2 (4-33)||(18797898-18797927)
[»] chr5 (2 HSPs)
chr5 (57-136)||(25055838-25055917)
chr5 (1-31)||(25055812-25055842)
[»] chr6 (1 HSPs)
chr6 (62-136)||(12351031-12351105)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 40643495 - 40643233
Alignment:
Q  1 cactttaaaatgatgaactgtttgtgactactgactgaattttgaaa--atgaatgttactactgccttacctggttagaatctattatatattttatga 98  Q
    ||||||||||||||||||||||||||||||| ||||     || |||  ||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  40643495 cactttaaaatgatgaactgtttgtgactaccgact-----ttaaaatgatgaacgttactactgccttacctggttagaatctactatatattttatga 40643401  T
Q  99 actggttgatttaaggtctgaattatgaacaattgatttccttgctattggtttgcaaatgttcaattgcaagaacaggctaaaatatatatgtgcacaa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40643400 actggttgatttaaggtctgaattatgaacaattgatttccttgctattggtttgcaaatgttcaattgcaagaacaggctaaaatatatatgtgcacaa 40643301  T
Q  199 gatcaagtgtgacaaattggggaacttagaactcggttgcaggtacagctttgattggaagaggatgc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40643300 gatcaagtgtgacaaattggggaacttagaactcggttgcaggtacagctttgattggaagaggatgc 40643233  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 35594876 - 35594797
Alignment:
Q  57 actactgccttacctggttagaatctattatatattttatgaactggttgatttaaggtctgaattatgaacaattgatt 136  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||    
T  35594876 actactgccttacctggttagaatctattatatcttttatgaactggttgatttcaggtctaaattatgaacaattgatt 35594797  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 35594899 - 35594870
Alignment:
Q  4 tttaaaatgatgaactgtttgtgactactg 33  Q
    ||||||||||||||||||||||||||||||    
T  35594899 tttaaaatgatgaactgtttgtgactactg 35594870  T

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Target: scaffold1303 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 1867 - 1946
Alignment:
Q  57 actactgccttacctggttagaatctattatatattttatgaactggttgatttaaggtctgaattatgaacaattgatt 136  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||    
T  1867 actactgccttacctggttagaatctattatatcttttatgaactggttgatttcaggtctaaattatgaacaattgatt 1946  T

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Target: scaffold1303; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 1844 - 1873
Alignment:
Q  4 tttaaaatgatgaactgtttgtgactactg 33  Q
    ||||||||||||||||||||||||||||||    
T  1844 tttaaaatgatgaactgtttgtgactactg 1873  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 22220813 - 22220892
Alignment:
Q  57 actactgccttacctggttagaatctattatatattttatgaactggttgatttaaggtctgaattatgaacaattgatt 136  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||    
T  22220813 actactgccttacctggttagaatctattatatcttttatgaactggttgatttcaggtctaaattatgaacaattgatt 22220892  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 22220787 - 22220819
Alignment:
Q  1 cactttaaaatgatgaactgtttgtgactactg 33  Q
    |||||||||||||||||||||||||||||||||    
T  22220787 cactttaaaatgatgaactgtttgtgactactg 22220819  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 1834549 - 1834628
Alignment:
Q  57 actactgccttacctggttagaatctattatatattttatgaactggttgatttaaggtctgaattatgaacaattgatt 136  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||    
T  1834549 actactgccttacctggttagaatctattatatcttttatgaactggttgatttcaggtctaaattatgaacaattgatt 1834628  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1834523 - 1834555
Alignment:
Q  1 cactttaaaatgatgaactgtttgtgactactg 33  Q
    |||||||||||||||||||||||||||||||||    
T  1834523 cactttaaaatgatgaactgtttgtgactactg 1834555  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 18797904 - 18797825
Alignment:
Q  57 actactgccttacctggttagaatctattatatattttatgaactggttgatttaaggtctgaattatgaacaattgatt 136  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||    
T  18797904 actactgccttacctggttagaatctattatatcttttatgaactggttgatttcaggtctaaattatgaacaattgatt 18797825  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 18797927 - 18797898
Alignment:
Q  4 tttaaaatgatgaactgtttgtgactactg 33  Q
    ||||||||||||||||||||||||||||||    
T  18797927 tttaaaatgatgaactgtttgtgactactg 18797898  T

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Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 25055838 - 25055917
Alignment:
Q  57 actactgccttacctggttagaatctattatatattttatgaactggttgatttaaggtctgaattatgaacaattgatt 136  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||    
T  25055838 actaccgccttacctggttagaatctattatatcttttatgaactggttgatttcaggtctaaattatgaacaattgatt 25055917  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 25055812 - 25055842
Alignment:
Q  1 cactttaaaatgatgaactgtttgtgactac 31  Q
    |||||||||||||||||||||||||||||||    
T  25055812 cactttaaaatgatgaactgtttgtgactac 25055842  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 12351031 - 12351105
Alignment:
Q  62 tgccttacctggttagaatctattatatattttatgaactggttgatttaaggtctgaattatgaacaattgatt 136  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||    
T  12351031 tgccttacctggttagaatctattatatcttttatgaactggttgatttcaggtctaaattatgaacaattgatt 12351105  T

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