View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13431_high_2 (Length: 477)
Name: NF13431_high_2
Description: NF13431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13431_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 18230680 - 18231143
Alignment:
| Q |
1 |
ctgcaatcaaagtcaaattatattttgggtctaatctctgcttaacctcacaataaaatttcttcattataggttctgaagggtcaactgtttgtggatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
18230680 |
ctgcaatcaaagtcaaattatattttgggtctaatctctgcttaacgtcacaataaaatttcttcattataggttctgaagggtcaactctttgtggatc |
18230779 |
T |
|
| Q |
101 |
aatattgtgaaaaggaacaattcagctttattgattacatatctagtggatttgaactaaacttcttggttgcggtagatttcactggttagtgtcaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18230780 |
aatattgtgaaaaggaacaattcagctttattgactacatatctagtggatttgaactaaacttcttggttgcggtagatttcactggttagtgtcaact |
18230879 |
T |
|
| Q |
201 |
gttctattaattaaggtcaataatagtactaatttcatatttgtagtttgttaatagcttcaatatatatatgtccagcttcaaatggaagtcctcaaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18230880 |
gttctattaattaaggtcaataatagtactaatttcatatttgtagtttgttaatagcttcaatatatatatgtccagcttcaaacggaagtcctcaaca |
18230979 |
T |
|
| Q |
301 |
gccagattctttgcattacatcgatttatccggtcggttaaattcataccaaaaggtaagcttgatacttgtcaatggaagatttcaaattttttaatca |
400 |
Q |
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| T |
18230980 |
gccagattctttgcattacatcgatttatccggtcggttaaattcataccaaaaggtaagcttgatacttgtcgatggaagatttcaaattttttaatca |
18231079 |
T |
|
| Q |
401 |
tcaacttgtgaaacataacaatcgcattcaatatttcactatgatcctacctttttgtaacttc |
464 |
Q |
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| T |
18231080 |
tcaacttgtgaaacaaaacaatcgcattcaagatttcactatgatcctgcttttttttaacttc |
18231143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 47074709 - 47074304
Alignment:
| Q |
18 |
ttatattttgggtctaatctctgcttaacctcaca----ataaaatttcttcattataggttctgaagggtcaactgtttgtggatcaatattgtgaaaa |
113 |
Q |
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||||||||||| | | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47074709 |
ttatattttggatttgatctctgcttaacctcacacttaataaaatttcttcattataggttctgaagggtcaactctttgtggatcaatattgtgaaaa |
47074610 |
T |
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| Q |
114 |
ggaacaattcagctttattgattacatatctagtggatttgaactaaacttcttggttgcggtagatttcactggttagtgtcaattgttctattaatta |
213 |
Q |
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| T |
47074609 |
ggaacaattcagctttattgactacgtatctagtggatttgaactaaacttcatggttgcggtagatttcactggtaagtagctatttttctattgacta |
47074510 |
T |
|
| Q |
214 |
aggtcaataatagtactaatttcatatttgtagtttgttaatagcttcaatatatatatgtccagcttcaaatggaagtcctcaacagccagattctttg |
313 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||| |||||| ||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47074509 |
aggtgaataatagtactaatttcatatctgtagtttgttaagtgcttca----ctatgtgtccagcttcaaatggaaatcctcaacagccagattctttg |
47074414 |
T |
|
| Q |
314 |
cattacatcgatttatccggtcggttaaattcataccaaaaggtaagct-----tgatacttgtcaatggaagatttcaaattttttaatcatcaacttg |
408 |
Q |
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| T |
47074413 |
cattacatggatttatctggtcggttaaattcatatcaaaaggtaagcttaatatgatacttgtcaatggaagattccaacttttttaatcatcaacttg |
47074314 |
T |
|
| Q |
409 |
tgaaacataa |
418 |
Q |
| |
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|||||||||| |
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| T |
47074313 |
tgaaacataa |
47074304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 58 - 418
Target Start/End: Complemental strand, 47056689 - 47056337
Alignment:
| Q |
58 |
atttcttcattataggttctgaagggtcaactgtttgtggatcaatattgtgaaaaggaacaattcagctttattgattacatatctagtggatttgaac |
157 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47056689 |
atttcttcattataggttctgaagggtcaactctttgtggaccaatattgagaaaaggaacaattcagctttattgattacatatctagtggatttgaac |
47056590 |
T |
|
| Q |
158 |
taaacttcttggttgcggtagatttcactggttagtgtcaattgttctattaattaaggtcaataatagtactaatttcatatttgtagtttgttaatag |
257 |
Q |
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| |||||| |||| || |||||||||||||| |||||||||||| |||| | | | || ||| ||||||||||||||| |||||||||||| || || |
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| T |
47056589 |
tgaacttcatggtggcaatagatttcactggtaggtgtcaattgttttattcactgaagt-aat--tagtactaatttcatctttgtagtttgtgaaaag |
47056493 |
T |
|
| Q |
258 |
cttcaatatatatatgtccagcttcaaatggaagtcctcaacagccagattctttgcattacatcgatttatccggtcggttaaattcataccaaaaggt |
357 |
Q |
| |
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| T |
47056492 |
cttca----atgttttttcagcttcaaatggagatcctcaaaagtcagattctttgcattacatcgatgaatctggtcggttaaattcataccaaaaggt |
47056397 |
T |
|
| Q |
358 |
aagcttgatacttgtcaatggaagatttcaaattttttaatcatcaacttgtgaaacataa |
418 |
Q |
| |
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||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
47056396 |
aagattgatacttgtc-atggaagattcttaatttcttaatcatcaacttgtgaaacataa |
47056337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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