View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13431_high_3 (Length: 414)
Name: NF13431_high_3
Description: NF13431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13431_high_3 |
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| [»] scaffold0294 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 134 - 407
Target Start/End: Original strand, 15755312 - 15755580
Alignment:
| Q |
134 |
ttcttcgtttcactgtttcacgtatcatcgccttcgtctttcttcatactctattttctcaattttactactttctgcttcgtcttcatcatgcctccaa |
233 |
Q |
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| T |
15755312 |
ttcttcgtttcaccgtttcatgcatcatcgccttcggctttcttcatactctgttttctcaattctactactctctgcttcgtcctcatcatgcctccaa |
15755411 |
T |
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| Q |
234 |
gacaagctcctcaagtggttcaacggaacactgattcaccttactacgtgcatccaagtgaaaatcctggctctgtgttagttacgcctcttcctgacgg |
333 |
Q |
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| T |
15755412 |
gagaagatcctcaagttgttcaaccaaacactgattcaccttactacatgcatccaagtgaaaatcctggctct-tgttagttacacctcttcttgacgg |
15755510 |
T |
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| Q |
334 |
ttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctttcctttgatgatg |
407 |
Q |
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| T |
15755511 |
ttctaactacctc----ggcatcattctatgaaacgcgctttaggcgccaagaacaagctttcctttgttgatg |
15755580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 24 - 144
Target Start/End: Original strand, 15755150 - 15755270
Alignment:
| Q |
24 |
cttgagaagagtttgttacgattcagttagcttctgccattgatgcgtgaacttcaagattttcatcttttctcaattcatctcgatttcgtgaagaatg |
123 |
Q |
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| T |
15755150 |
cttgagaagagtttgttacgattcagttagctttcaccattgatgcgtgaacttcaagcttttcatcttttctcaattcatctcgatttcgtgaagaatc |
15755249 |
T |
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| Q |
124 |
acaccgattattcttcgtttc |
144 |
Q |
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| T |
15755250 |
acaccgattcttcttcgtttc |
15755270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 134 - 301
Target Start/End: Complemental strand, 6130 - 5962
Alignment:
| Q |
134 |
ttcttcgtttcactgtttcacgtatcatcgccttcgtctttcttcatactctattttctcaattttactacttt-ctgcttcgtcttcatcatgcctcca |
232 |
Q |
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|||||| |||||| |||||||| |||||| |||||| ||||||| | |||| ||||||||||| ||||||||| |||||||||| |||||||||||||| |
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| T |
6130 |
ttcttcttttcaccgtttcacgcatcatctacttcgtttttcttcttcctctgttttctcaattctactacttttctgcttcgtcctcatcatgcctcca |
6031 |
T |
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| Q |
233 |
agacaagctcctcaagtggttcaacggaacactgattcaccttactacgtgcatccaagtgaaaatcct |
301 |
Q |
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| T |
6030 |
agacaagctcctcgggttattcaaccaaacactgattcaccttactatgtgcattcgagtgaaaatcct |
5962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 6294 - 6197
Alignment:
| Q |
21 |
ctccttgagaagagtttgttacgattcagttagcttctgccattgatgcgtgaacttcaagattttcatcttttctcaattcatctcgatttcgtgaa |
118 |
Q |
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| T |
6294 |
ctccttgagaagagtttgttacgattcagttagcttccgccattgatgtgtgagcttcaatcttttcatgctttctcaatttctctcgatttcgtgaa |
6197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 216 - 407
Target Start/End: Original strand, 17118153 - 17118344
Alignment:
| Q |
216 |
tcttcatcatgcctccaagacaagctcctcaagtggttcaacggaacactgattcaccttactacgtgcatccaagtgaaaatcctggctctgtgttagt |
315 |
Q |
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| T |
17118153 |
tcttcatcatccctcctcgtcaagctcctcagattgttcaatcaaacactgattcaccgtattatgtgcatcctaatgaaggaccaagctatgtgatagt |
17118252 |
T |
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| Q |
316 |
tacgcctcttcctgacggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctttcctttgatgatg |
407 |
Q |
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||| ||||||| ||| ||||||||||||||||||||||||||||||||||| || | ||||| || |||||||| |||||||||| ||||| |
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| T |
17118253 |
tacacctcttcttgatggttctaactacctcgcatggcatcgttctatgaagcgcccattaggagcgaagaacaaactttcctttgttgatg |
17118344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 366
Target Start/End: Complemental strand, 13139970 - 13139865
Alignment:
| Q |
261 |
acactgattcaccttactacgtgcatccaagtgaaaatcctggctctgtgttagttacgcctcttcctgacggttctaactacctcgcatggcatcgttc |
360 |
Q |
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| T |
13139970 |
acactgattttccttattacgtgcatcctagtgaaggacctaactttgtgctagttacgcctcttcttgatggttccaactacctcgcatgaaatcgttc |
13139871 |
T |
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| Q |
361 |
tatgaa |
366 |
Q |
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|||||| |
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| T |
13139870 |
tatgaa |
13139865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 17117909 - 17117978
Alignment:
| Q |
25 |
ttgagaagagtttgttacgattcagttagcttctgccattgatgcgtgaacttcaagatt-ttcatcttt |
93 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||| ||| | ||||| || ||||||||| |
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| T |
17117909 |
ttgagaggagtttgttacgattcagttagcttccgccattgatgcatgatcctcaagcttcttcatcttt |
17117978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 394
Target Start/End: Original strand, 26628696 - 26628758
Alignment:
| Q |
332 |
ggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctt |
394 |
Q |
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| T |
26628696 |
ggttctaactacctcgcatggagtcgttctatgcaacgtgctttaggtgccaagaataagctt |
26628758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 394
Target Start/End: Original strand, 26734672 - 26734734
Alignment:
| Q |
332 |
ggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctt |
394 |
Q |
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| T |
26734672 |
ggttctaactacctcgcatggagtcgttctatgcaacgtgctttaggtgccaagaataagctt |
26734734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 13140209 - 13140166
Alignment:
| Q |
26 |
tgagaagagtttgttacgattcagttagcttctgccattgatgc |
69 |
Q |
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| T |
13140209 |
tgagaggagttacttacgattcagttagcttctgccattgatgc |
13140166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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