View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13431_high_7 (Length: 359)
Name: NF13431_high_7
Description: NF13431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13431_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 21 - 341
Target Start/End: Original strand, 41525165 - 41525488
Alignment:
| Q |
21 |
gtatgtagtgaagttggcaaaa-aacaatttcctcatttttctctttggtttttcacatttttccttcggataagataattaaattaacttaaattaaat |
119 |
Q |
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| T |
41525165 |
gtatgtagtgaagttggcaaaaaaacaatttcctcatttttctctttggtttttcacattgttccttcggataagataattaaattaacttaaattaaat |
41525264 |
T |
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| Q |
120 |
taaacgtgaccatctattcaaacattgatttttagaagattttttctcgttacacccttaaatatgacatcata--tgaactcatttaatgttgtcttta |
217 |
Q |
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| T |
41525265 |
taaacgtgaccatctattcaaacattgatttttagaagattttttctcgttacacccttaaatatgacatcatatgtgaactcatttaatgttgtcttta |
41525364 |
T |
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| Q |
218 |
aatatgaattttaccgtagatgtgaactcaatttgtgaatgtgcatgtaaattgaattaacgtttgtttattcaatttgtgggattgaattcaatttgag |
317 |
Q |
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| T |
41525365 |
aatatgaattttaccgtagatgtgaactcaatttgtgaatgtgcatgtaaattgaattaacgtttgtttattcaatttgtgggattgaattcaatttgag |
41525464 |
T |
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| Q |
318 |
tgatactttaattaatatacttag |
341 |
Q |
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| T |
41525465 |
tgatactttaattaatatacttag |
41525488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 41516264 - 41516415
Alignment:
| Q |
21 |
gtatgtagtgaagttggcaaaaaacaatttcctcatttttctctttggtttttcacatttttccttcggataagataattaaattaacttaaattaaatt |
120 |
Q |
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| T |
41516264 |
gtatgtagtgaagttggtaaaaaacaatttcctcatttctctctttggtttttcaca-tgttccttcgcataaaataa----------ttaaattaaatt |
41516352 |
T |
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| Q |
121 |
aaacgtgaccatctattcaaaca--ttgatttttagaagattttttctcgttacacccttaaa |
181 |
Q |
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| T |
41516353 |
aaatgtgaccacctattcaaacattttgatttttagaagactttttctagttacacctttaaa |
41516415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 31592969 - 31592893
Alignment:
| Q |
232 |
cgtagatgtgaactcaatttgtgaatgtgcatgtaaattgaattaacgtttgtttattcaatttgtgggattgaatt |
308 |
Q |
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|||||| |||||||||||||||| ||||| | || |||| ||||||| ||| || |||||||||||||| ||||||| |
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| T |
31592969 |
cgtagacgtgaactcaatttgtgtatgtgtaagtgaattaaattaacatttattaattcaatttgtgggtttgaatt |
31592893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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