View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13431_low_1 (Length: 562)
Name: NF13431_low_1
Description: NF13431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13431_low_1 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 549
Target Start/End: Original strand, 40465739 - 40466263
Alignment:
| Q |
19 |
gctagggtttccgtaaatacaaacaaatagctttaaaaataagaatatgaagctcttggcttacccaattacatgtcgaccaccatcataaacagcttga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40465739 |
gctagggtttccgtaaatacaaacaaatagctttaaaaagaaga---tgaagctcttg-cttacccaattacatgtcgaccaccatcataaacagcttga |
40465834 |
T |
|
| Q |
119 |
gaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaatatttcttgacacctttttatatatcaaaatacaacgaagtttagaactaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40465835 |
gaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaatatttcttgacacctttttatatatcaaaatacaacgaagtttagaactaa |
40465934 |
T |
|
| Q |
219 |
acaccatattat-------gtatataggtgaaccaaatacgtcaaatttctttgacccgcttttacttatattttgttatagagagtatataaataaatt |
311 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40465935 |
acaccatattatatcataggtatataggtgaaacaaatacgtcaaatttctttgactcgcttttacttatattttgttacagagagtatataaataaatt |
40466034 |
T |
|
| Q |
312 |
aagcactaaagtacaaagacaaatgaagaagttatgnnnnnnntattgtattattcatgatgataaaataaggaaaatgnnnnnnnnnttcaaaagtagt |
411 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40466035 |
aagcactaaagtacaaagac-------gaagttatg-aaaaaatattgtattattcatgatgataaaataaggaaaatg-aaaaaaaattcaaaagtagt |
40466125 |
T |
|
| Q |
412 |
aataattaccaattcttttccaagttcaatagcagcatccttatagctagttttgttaccagggctactaccacaaaacacacaaattctcttaaacttt |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40466126 |
aataattaccaattcttttccaagttcaatagcagcatccttatagctagttttgttaccagggctactaccacaaaacacacaaattctcttaaacttt |
40466225 |
T |
|
| Q |
512 |
gataccttcatttccatctctctctccatattcatctc |
549 |
Q |
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|||||||||||||| |||||||||||||||||| |||| |
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| T |
40466226 |
gataccttcatttctatctctctctccatattcttctc |
40466263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 81 - 187
Target Start/End: Complemental strand, 21625405 - 21625299
Alignment:
| Q |
81 |
acccaattacatgtcgaccaccatcataaacagcttgagaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaatatttcttgacac |
180 |
Q |
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||||||| ||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
21625405 |
acccaatcacatgtcgacctccatcagaaacagcttgagaaaccaaccccatcaaaccaatgctgcctcctccataaaccaaatcaatatttcttgacac |
21625306 |
T |
|
| Q |
181 |
cttttta |
187 |
Q |
| |
|
||||||| |
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| T |
21625305 |
cttttta |
21625299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 416 - 514
Target Start/End: Complemental strand, 21624111 - 21624013
Alignment:
| Q |
416 |
attaccaattcttttccaagttcaatagcagcatccttatagctagttttgttaccagggctactaccacaaaacacacaaattctcttaaactttgat |
514 |
Q |
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|||||||| || |||||||| |||||||||||||| ||||||||| | ||||||||||| |||||||||||||| |||||||| ||||||||||||||| |
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| T |
21624111 |
attaccaactcatttccaagctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttgat |
21624013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 80 - 183
Target Start/End: Original strand, 28271406 - 28271509
Alignment:
| Q |
80 |
tacccaattacatgtcgaccaccatcataaacagcttgagaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaatatttcttgaca |
179 |
Q |
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||||| || ||||||| |||||||||| ||||||||| |||| ||| ||||| | ||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
28271406 |
taccctatgacatgtcttccaccatcatgaacagcttgtgaaaccaaacccattagaccaatgcttcctcctccataaactagatcaatatttcttgaca |
28271505 |
T |
|
| Q |
180 |
cctt |
183 |
Q |
| |
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|||| |
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|
| T |
28271506 |
cctt |
28271509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 418 - 513
Target Start/End: Original strand, 28271927 - 28272022
Alignment:
| Q |
418 |
taccaattcttttccaagttcaatagcagcatccttatagctagttttgttaccagggctactaccacaaaacacacaaattctcttaaactttga |
513 |
Q |
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||||||||| |||||||||||||| |||||||| | ||| ||| |||| || ||||| ||||| |||||||| ||||||| ||||| |||||||| |
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| T |
28271927 |
taccaattcatttccaagttcaatggcagcatcttgataactacttttcttgccaggactacttccacaaaagacacaaaccctcttgaactttga |
28272022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 77319 - 77216
Alignment:
| Q |
80 |
tacccaattacatgtcgaccaccatcataaacagcttgagaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaatatttcttgaca |
179 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||||||||||| || ||||| | ||||||||| ||||||||||| || || ||||| || ||||| | |
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| T |
77319 |
tacccaatgacatggcgaccaccatcatgaacagcttgagaaactaaacccatgagaccaatgcttcctcctccatacacaagatcaatgttccttgaaa |
77220 |
T |
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| Q |
180 |
cctt |
183 |
Q |
| |
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|||| |
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| T |
77219 |
cctt |
77216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 80 - 183
Target Start/End: Original strand, 40888965 - 40889068
Alignment:
| Q |
80 |
tacccaattacatgtcgaccaccatcataaacagcttgagaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaatatttcttgaca |
179 |
Q |
| |
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|||||||| ||||| ||||||||||||| |||||||||||||| || ||||| | ||||||||| ||||||||||| || || ||||| || ||||| | |
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| T |
40888965 |
tacccaatgacatggcgaccaccatcatgaacagcttgagaaactaaacccatgagaccaatgcttcctcctccatacacaagatcaatgttccttgaaa |
40889064 |
T |
|
| Q |
180 |
cctt |
183 |
Q |
| |
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|||| |
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|
| T |
40889065 |
cctt |
40889068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 38462800 - 38462751
Alignment:
| Q |
246 |
aaatacgtcaaatttctttgacccgcttttacttatattttgttatagag |
295 |
Q |
| |
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|||||| |||| |||||||||| ||||||| |||||||||||||| |||| |
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| T |
38462800 |
aaatacctcaactttctttgactcgcttttgcttatattttgttacagag |
38462751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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