View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13431_low_2 (Length: 489)

Name: NF13431_low_2
Description: NF13431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13431_low_2
NF13431_low_2
[»] chr3 (33 HSPs)
chr3 (18-471)||(38000040-38000485)
chr3 (170-300)||(42257220-42257350)
chr3 (170-317)||(14788495-14788642)
chr3 (170-317)||(14788280-14788427)
chr3 (170-276)||(930369-930475)
chr3 (170-276)||(11442091-11442197)
chr3 (170-276)||(21166092-21166198)
chr3 (170-276)||(32473767-32473873)
chr3 (170-276)||(929917-930023)
chr3 (170-276)||(32474398-32474504)
chr3 (170-276)||(43521083-43521186)
chr3 (177-276)||(11441662-11441761)
chr3 (186-292)||(42257982-42258087)
chr3 (170-276)||(50766636-50766740)
chr3 (170-276)||(5113204-5113310)
chr3 (170-276)||(20586520-20586626)
chr3 (170-276)||(24394670-24394776)
chr3 (170-276)||(26006714-26006820)
chr3 (191-276)||(36992109-36992194)
chr3 (191-276)||(37017549-37017634)
chr3 (191-276)||(45000763-45000848)
chr3 (170-276)||(20586078-20586184)
chr3 (170-276)||(5113644-5113750)
chr3 (170-276)||(24394253-24394359)
chr3 (170-276)||(45000321-45000427)
chr3 (170-276)||(26006152-26006258)
chr3 (170-276)||(43104713-43104819)
chr3 (170-213)||(50836222-50836265)
chr3 (170-213)||(50839588-50839631)
chr3 (170-205)||(24181950-24181985)
chr3 (190-235)||(40820485-40820530)
chr3 (185-230)||(46719683-46719728)
chr3 (170-233)||(33968187-33968250)
[»] chr5 (23 HSPs)
chr5 (163-471)||(42655481-42655789)
chr5 (170-276)||(5620805-5620911)
chr5 (183-276)||(16996965-16997058)
chr5 (170-276)||(3595783-3595889)
chr5 (170-276)||(8321323-8321429)
chr5 (170-276)||(12330598-12330704)
chr5 (170-276)||(7858333-7858439)
chr5 (170-276)||(12330154-12330260)
chr5 (191-276)||(24027622-24027707)
chr5 (170-276)||(3596229-3596335)
chr5 (170-276)||(8320881-8320987)
chr5 (170-276)||(24027193-24027299)
chr5 (170-276)||(29759603-29759709)
chr5 (199-276)||(7858755-7858832)
chr5 (190-274)||(33283192-33283275)
chr5 (161-227)||(31078453-31078519)
chr5 (191-255)||(25993525-25993589)
chr5 (190-270)||(33283965-33284044)
chr5 (185-255)||(2319288-2319357)
chr5 (170-226)||(42654843-42654898)
chr5 (193-234)||(4789550-4789590)
chr5 (170-230)||(35262458-35262518)
chr5 (170-221)||(36912252-36912302)
[»] chr1 (25 HSPs)
chr1 (170-317)||(48594120-48594267)
chr1 (170-317)||(48598731-48598878)
chr1 (170-317)||(48153054-48153201)
chr1 (170-317)||(50164243-50164390)
chr1 (170-317)||(50164604-50164751)
chr1 (170-284)||(28371631-28371745)
chr1 (170-276)||(2820964-2821070)
chr1 (170-276)||(12800406-12800512)
chr1 (170-317)||(48589033-48589182)
chr1 (170-276)||(12799995-12800101)
chr1 (170-281)||(28371205-28371316)
chr1 (170-276)||(2821425-2821531)
chr1 (171-276)||(33631026-33631131)
chr1 (170-276)||(38328822-38328928)
chr1 (170-276)||(43755855-43755961)
chr1 (170-276)||(43756283-43756389)
chr1 (170-276)||(38469221-38469327)
chr1 (170-276)||(38468912-38469018)
chr1 (170-230)||(17151861-17151921)
chr1 (192-276)||(38328415-38328499)
chr1 (170-227)||(33630483-33630540)
chr1 (191-234)||(32537672-32537715)
chr1 (170-230)||(17151008-17151068)
chr1 (170-226)||(32538488-32538544)
chr1 (190-219)||(45065378-45065407)
[»] chr8 (15 HSPs)
chr8 (170-317)||(14197665-14197812)
chr8 (170-317)||(39439764-39439911)
chr8 (170-276)||(37657853-37657959)
chr8 (170-317)||(39440494-39440640)
chr8 (170-276)||(30846022-30846128)
chr8 (170-276)||(41714609-41714715)
chr8 (170-276)||(30846432-30846538)
chr8 (170-223)||(31408164-31408217)
chr8 (207-276)||(41715203-41715272)
chr8 (207-276)||(37658480-37658549)
chr8 (190-230)||(35759220-35759260)
chr8 (190-230)||(41348171-41348211)
chr8 (190-227)||(42573606-42573643)
chr8 (188-276)||(30272892-30272979)
chr8 (190-226)||(41092199-41092235)
[»] chr4 (24 HSPs)
chr4 (170-317)||(52532129-52532276)
chr4 (170-317)||(5259223-5259370)
chr4 (170-313)||(52532329-52532472)
chr4 (170-276)||(19860336-19860442)
chr4 (170-276)||(19860808-19860914)
chr4 (161-276)||(20174967-20175082)
chr4 (170-276)||(5235380-5235486)
chr4 (170-276)||(6934438-6934544)
chr4 (170-276)||(30213851-30213957)
chr4 (170-276)||(6933827-6933933)
chr4 (191-276)||(5235822-5235907)
chr4 (178-230)||(25655620-25655673)
chr4 (190-230)||(11680303-11680343)
chr4 (190-230)||(11688582-11688622)
chr4 (185-230)||(12590184-12590229)
chr4 (190-227)||(46764279-46764316)
chr4 (216-276)||(20175361-20175421)
chr4 (193-304)||(35428066-35428177)
chr4 (188-234)||(3847911-3847957)
chr4 (190-227)||(31910581-31910618)
chr4 (170-234)||(39412771-39412835)
chr4 (185-230)||(52758691-52758736)
chr4 (170-226)||(3167463-3167519)
chr4 (170-213)||(33370873-33370917)
[»] chr6 (20 HSPs)
chr6 (163-299)||(28535376-28535513)
chr6 (170-276)||(28983228-28983334)
chr6 (170-276)||(34717691-34717797)
chr6 (171-276)||(19062759-19062864)
chr6 (170-276)||(34717248-34717354)
chr6 (170-276)||(28982788-28982893)
chr6 (170-276)||(7635571-7635677)
chr6 (170-276)||(7635130-7635236)
chr6 (170-276)||(18290431-18290537)
chr6 (170-276)||(18290221-18290327)
chr6 (170-232)||(2924952-2925014)
chr6 (170-276)||(4348853-4348959)
chr6 (191-276)||(12999413-12999498)
chr6 (190-230)||(10608301-10608341)
chr6 (170-209)||(14496450-14496489)
chr6 (178-230)||(930937-930991)
chr6 (170-234)||(18605837-18605901)
chr6 (170-199)||(14496483-14496512)
chr6 (190-230)||(1034748-1034788)
chr6 (170-233)||(25371175-25371238)
[»] scaffold0095 (1 HSPs)
scaffold0095 (170-317)||(42827-42973)
[»] chr7 (30 HSPs)
chr7 (170-276)||(20560217-20560323)
chr7 (161-276)||(20559743-20559858)
chr7 (170-281)||(42901067-42901178)
chr7 (170-276)||(33139780-33139886)
chr7 (170-276)||(33140230-33140336)
chr7 (170-276)||(4179643-4179749)
chr7 (170-276)||(4180274-4180380)
chr7 (170-317)||(35211903-35212055)
chr7 (170-284)||(42900653-42900767)
chr7 (170-276)||(40641106-40641212)
chr7 (191-276)||(30414208-30414293)
chr7 (170-276)||(25137418-25137524)
chr7 (170-276)||(40640659-40640762)
chr7 (170-276)||(25137860-25137967)
chr7 (190-274)||(24322289-24322372)
chr7 (190-230)||(29006374-29006414)
chr7 (190-230)||(29007180-29007220)
chr7 (170-234)||(33686932-33686996)
chr7 (185-255)||(45887301-45887370)
chr7 (178-230)||(44896060-44896113)
chr7 (190-226)||(41224828-41224864)
chr7 (191-230)||(35613225-35613264)
chr7 (185-255)||(4985351-4985420)
chr7 (185-255)||(4989449-4989518)
chr7 (185-255)||(45887937-45888006)
chr7 (185-255)||(47331910-47331979)
chr7 (170-226)||(33687735-33687791)
chr7 (193-234)||(42607111-42607151)
chr7 (190-255)||(47331284-47331348)
chr7 (190-226)||(29314608-29314644)
[»] chr2 (19 HSPs)
chr2 (170-276)||(3705343-3705449)
chr2 (170-276)||(16681572-16681678)
chr2 (170-276)||(3705760-3705868)
chr2 (170-276)||(30899396-30899502)
chr2 (170-276)||(6609979-6610085)
chr2 (170-276)||(7994509-7994615)
chr2 (170-276)||(15561976-15562082)
chr2 (170-276)||(16903833-16903939)
chr2 (170-276)||(16992327-16992434)
chr2 (191-276)||(7994082-7994167)
chr2 (170-276)||(15561547-15561653)
chr2 (191-276)||(16903425-16903509)
chr2 (170-276)||(6609557-6609663)
chr2 (170-276)||(30899837-30899943)
chr2 (161-263)||(37996532-37996634)
chr2 (181-265)||(16682213-16682298)
chr2 (185-256)||(41984749-41984819)
chr2 (170-230)||(34617659-34617719)
chr2 (190-226)||(40992249-40992285)
[»] scaffold0508 (2 HSPs)
scaffold0508 (170-276)||(4139-4245)
scaffold0508 (170-276)||(4560-4666)
[»] scaffold0022 (2 HSPs)
scaffold0022 (170-276)||(61580-61686)
scaffold0022 (210-276)||(62023-62089)
[»] scaffold0006 (1 HSPs)
scaffold0006 (191-276)||(202219-202304)
[»] scaffold0136 (1 HSPs)
scaffold0136 (169-235)||(22203-22270)
[»] scaffold0155 (1 HSPs)
scaffold0155 (190-234)||(17366-17410)
[»] scaffold0180 (1 HSPs)
scaffold0180 (190-230)||(23073-23113)
[»] scaffold0129 (1 HSPs)
scaffold0129 (171-230)||(42493-42553)


Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 471
Target Start/End: Complemental strand, 38000485 - 38000040
Alignment:
Q  18 atattacaacttaaatctgttgatggcggccaccccaaacnnnnnnnatctgactctaccactaaattctctcattcattctcctaacaatccattaaat 117  Q
    |||||||||||||||| |||||||||||||||||||||||       ||| |||||  ||||||||||||||  ||||||||||||||||||||||||||    
T  38000485 atattacaacttaaatgtgttgatggcggccaccccaaactttttt-atccgactccgccactaaattctcttgttcattctcctaacaatccattaaat 38000387  T
Q  118 attagttacacgtactggtaaagattctcacggatgtaagaagtaaggtcacgtttagcatgggaaagctacttttttcccaccatgggaaagttagttt 217  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  38000386 attagttacacgtacgggtaaagattctcacggatgtaagaagtaaggtcacgtttagcatgggaaagctgcttttttcccaccatggaaaagttagttt 38000287  T
Q  218 ttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagattttcttcttttgtcttcaacctcacaatcattaaccaagacggt 317  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38000286 ttgaccattagatcaaaccaagaacacatccttatcatacttcctcatcactagattttcttcttttgtcttcaacctcacaaccattaaccaagacggt 38000187  T
Q  318 gataacaaacaacatcgtcttcatcatgttctt-nnnnnnnnccagaaaaagtaaattaaacaacaatctgaacaatttttaattttagtttggcgcatt 416  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  38000186 gataacaaacaacatcgtcttcatcatgttcttaaaaaaaaaccagaaaaagtaaattaaacaaca--------aatttttaattttagtttggcgcatt 38000095  T
Q  417 taattaagagtatctaaaagattattactcccaaatatcttcatcttcttctcac 471  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38000094 taattaagagtatttaaaagattattactcccaaatatcttcatcttcttctcac 38000040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 170 - 300
Target Start/End: Original strand, 42257220 - 42257350
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  42257220 gtttagcatgggaaaactacttttttcccaccatggaaaagttagtttttgaccattaaatcaaaccaagaacacatctttatcatactccctcatcact 42257319  T
Q  270 agattttcttcttttgtcttcaacctcacaa 300  Q
    |||||||||||||||||||||||||||||||    
T  42257320 agattttcttcttttgtcttcaacctcacaa 42257350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 170 - 317
Target Start/End: Complemental strand, 14788642 - 14788495
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||| ||    
T  14788642 gtttaacatgggaaagctacttttttcctatcatgggaaagttagtttttgaccattagatcaaaccaagaagacattcttatcatacttcctcatcgct 14788543  T
Q  270 agattttcttcttttgtcttcaacctcacaatcattaaccaagacggt 317  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||    
T  14788542 agattttcttcttttgtcttcaacctcacaaccatcaatcaagacggt 14788495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 170 - 317
Target Start/End: Original strand, 14788280 - 14788427
Alignment:
Q  170 gtttagcatgggaaagctactttttt-cccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    ||||||||||||||| |||||||||| |||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  14788280 gtttagcatgggaaatctactttttttcccaccatga-aaagttagtttttgaccattagaacaaaccaagaacacatctttatcatactccctcatcac 14788378  T
Q  269 tagattttcttcttttgtcttcaacctcacaatcattaaccaagacggt 317  Q
    || |||||||||||||||||||||||||| || ||| ||||||||||||    
T  14788379 taaattttcttcttttgtcttcaacctcagaaccatcaaccaagacggt 14788427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 930475 - 930369
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  930475 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcact 930376  T
Q  270 agatttt 276  Q
    |||||||    
T  930375 agatttt 930369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 11442197 - 11442091
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  11442197 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaacaaagaacacatccttatcatactccctcatcact 11442098  T
Q  270 agatttt 276  Q
    |||||||    
T  11442097 agatttt 11442091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 21166198 - 21166092
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  21166198 gtttagcatgggaaagttacttttttcccaccatgggaaaattagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcact 21166099  T
Q  270 agatttt 276  Q
    |||||||    
T  21166098 agatttt 21166092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 32473767 - 32473873
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||    
T  32473767 gtttagcatgggaaagctacttttttcccactatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttattatactccctcatcact 32473866  T
Q  270 agatttt 276  Q
    |||||||    
T  32473867 agatttt 32473873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 929917 - 930023
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| || |||||||    
T  929917 gtttagcatgggaaatctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaataacacatccttatcatactcccccatcact 930016  T
Q  270 agatttt 276  Q
    |||||||    
T  930017 agatttt 930023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 32474504 - 32474398
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||||| ||||||||||    
T  32474504 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaacgaagaacgcatccttaccatactccctcatcact 32474405  T
Q  270 agatttt 276  Q
    |||||||    
T  32474404 agatttt 32474398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 43521083 - 43521186
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||| |||||||||| ||||||||||    
T  43521083 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaacc---tacacatccttatcatactccctcatcact 43521179  T
Q  270 agatttt 276  Q
    |||||||    
T  43521180 agatttt 43521186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 11441662 - 11441761
Alignment:
Q  177 atgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  11441662 atgggaaagttacttttttttcaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcactagatttt 11441761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 186 - 292
Target Start/End: Complemental strand, 42258087 - 42257982
Alignment:
Q  186 ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagattttcttcttttg 285  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||| ||| |||||||| |||||||||| ||||||||||||||||||||||||||    
T  42258087 ctacttttttcccatcattggaaagttagtttttgaccattagatcaaatcaataacacatc-ttatcatactccctcatcactagattttcttcttttg 42257989  T
Q  286 tcttcaa 292  Q
    |||||||    
T  42257988 tcttcaa 42257982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 50766636 - 50766740
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||  ||||||||| |||||||||||    
T  50766636 gtttagcatgggaaagctacttttttcccaccatgg-aaagttaatttttgaccattagatcaaaccaagaacacattcttatcatac-tcctcatcact 50766733  T
Q  270 agatttt 276  Q
    |||||||    
T  50766734 agatttt 50766740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 5113204 - 5113310
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  5113204 gtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcac 5113302  T
Q  269 tagatttt 276  Q
    ||||||||    
T  5113303 tagatttt 5113310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 20586626 - 20586520
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  20586626 gtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcac 20586528  T
Q  269 tagatttt 276  Q
    ||||||||    
T  20586527 tagatttt 20586520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 24394776 - 24394670
Alignment:
Q  170 gtttagcatgggaaa-gctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    ||||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  24394776 gtttagcatgggaaatgctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcac 24394678  T
Q  269 tagatttt 276  Q
    ||||||||    
T  24394677 tagatttt 24394670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 26006820 - 26006714
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| ||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  26006820 gtttagcatgggaaaggctaattttt-cccatcatgagaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcac 26006722  T
Q  269 tagatttt 276  Q
    ||||||||    
T  26006721 tagatttt 26006714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 36992194 - 36992109
Alignment:
Q  191 tttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  36992194 tttttcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactagatttt 36992109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 37017634 - 37017549
Alignment:
Q  191 tttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  37017634 tttttcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactagatttt 37017549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 45000848 - 45000763
Alignment:
Q  191 tttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  45000848 tttttcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactagatttt 45000763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 20586078 - 20586184
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| |||||| |||||||||    
T  20586078 gtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaatcaagaacacatccttaccatactccctcatcac 20586176  T
Q  269 tagatttt 276  Q
    ||||||||    
T  20586177 tagatttt 20586184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 5113750 - 5113644
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||||||||||    | ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| |||||| ||||||||||    
T  5113750 gtttagcatgggaaagcctaatctttcccaccatgggaaagttagtttttaaccattagatcaaaccaagaatacatccttaccatactccctcatcact 5113651  T
Q  270 agatttt 276  Q
    |||||||    
T  5113650 agatttt 5113644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 24394253 - 24394359
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||| ||||||||| ||| |||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  24394253 gtttagtatgggaaagactaattttttcc-accataggaaagttagtttttaaccattagatcaaaccaagaacacatccttagcatactccctcatcac 24394351  T
Q  269 tagatttt 276  Q
    ||||||||    
T  24394352 tagatttt 24394359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 45000321 - 45000427
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| ||||| ||||| |||||||||||||||||| |||||||||||||| |||||||||||| ||| |||||| |||||||||    
T  45000321 gtttagcatgggaaaggctaattttt-cccactatgggaaagttagtttttaaccattagatcaaatcaagaacacatccttaccatactccctcatcac 45000419  T
Q  269 tagatttt 276  Q
    ||||||||    
T  45000420 tagatttt 45000427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 26006152 - 26006258
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||| |||||| | |||||||    
T  26006152 gtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaactaataacacatccttaccatactccttcatcac 26006250  T
Q  269 tagatttt 276  Q
    ||||||||    
T  26006251 tagatttt 26006258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 43104819 - 43104713
Alignment:
Q  170 gtttagcatgggaaa-gctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    ||||||||||||||| |||| ||||| ||||  |||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| ||||||||     
T  43104819 gtttagcatgggaaatgctaattttt-cccataatgggaaagttagtttttaaccattagatcaaacgaagaacacatctttaccatactccctcatcat 43104721  T
Q  269 tagatttt 276  Q
    ||||||||    
T  43104720 tagatttt 43104713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 50836222 - 50836265
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagtta 213  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  50836222 gtttagcatgggaaagctatttttttcccaccatgggaaagtta 50836265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 50839631 - 50839588
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagtta 213  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  50839631 gtttagcatgggaaagctatttttttcccaccatgggaaagtta 50839588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 205
Target Start/End: Complemental strand, 24181985 - 24181950
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgg 205  Q
    ||||||||||||||||||||||||||||||||||||    
T  24181985 gtttagcatgggaaagctacttttttcccaccatgg 24181950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 40820530 - 40820485
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccattagatcaaac 235  Q
    |||||||||||||||||||||||  | ||| |||||||||||||||    
T  40820530 ttttttcccaccatgggaaagttgatattttaccattagatcaaac 40820485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 46719683 - 46719728
Alignment:
Q  185 gctacttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    |||| ||||||| || |||||||||||||||||||| |||||||||    
T  46719683 gctagttttttctcatcatgggaaagttagtttttggccattagat 46719728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 33968187 - 33968250
Alignment:
Q  170 gtttagcatgggaaagcta-cttttttcccaccatgggaaagttagtttttgaccattagatcaa 233  Q
    ||||||||||||||||  | ||| ||||||||||||||||| | | |||||||||||||||||||    
T  33968187 gtttagcatgggaaagggaacttgtttcccaccatgggaaaat-attttttgaccattagatcaa 33968250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 163 - 471
Target Start/End: Complemental strand, 42655789 - 42655481
Alignment:
Q  163 aggtcacgtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcct 262  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  42655789 aggtcacgtttagcatgggaaagctacttctttcccaccatggaaaaattagtttttgaccattagatcaaaccaataacacatccttatcatacttcct 42655690  T
Q  263 catcactagattttcttcttttgtcttcaacctcacaatcattaaccaagacggtgataacaaacaacatcgtcttcatcatgttcttnnnnnnnnccag 362  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||        ||||    
T  42655689 catcactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggtgataacaaacaacatcgtcttcatgatgttcttaaaaaaaaccag 42655590  T
Q  363 aaaaagtaaattaaacaacaatctgaacaatttttaattttagtttggcgcatttaattaagagtatctaaaagattattactcccaaatatcttcatct 462  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  42655589 aaaaagtaaattaaacaacaatccgaacaatttttaattttagtttggtgcatttaattaagagtatttaaaagattattattcccaaatatcttcatct 42655490  T
Q  463 tcttctcac 471  Q
    |||||||||    
T  42655489 tcttctcac 42655481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 5620911 - 5620805
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  5620911 gtttagcatgggaaagttacttttttcccaccatgggaaaattagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcact 5620812  T
Q  270 agatttt 276  Q
    |||||||    
T  5620811 agatttt 5620805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 16997058 - 16996965
Alignment:
Q  183 aagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| |||||||||||||||||    
T  16997058 aagctacttttttcctaccatgggaaagttagtttttgaccattagatcaaacgaagaacacatccttaccatactccctcatcactagatttt 16996965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 3595783 - 3595889
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  3595783 gtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcac 3595881  T
Q  269 tagatttt 276  Q
    ||||||||    
T  3595882 tagatttt 3595889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 8321429 - 8321323
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  8321429 gtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcac 8321331  T
Q  269 tagatttt 276  Q
    ||||||||    
T  8321330 tagatttt 8321323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 12330704 - 12330598
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  12330704 gtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcac 12330606  T
Q  269 tagatttt 276  Q
    ||||||||    
T  12330605 tagatttt 12330598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 7858333 - 7858439
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||||||     
T  7858333 gtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcat 7858431  T
Q  269 tagatttt 276  Q
    ||||||||    
T  7858432 tagatttt 7858439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 12330154 - 12330260
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  12330154 gtttagcatgggaaaggctaatttt-tcccaccatgggaaagttaatttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcac 12330252  T
Q  269 tagatttt 276  Q
    ||||||||    
T  12330253 tagatttt 12330260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 24027707 - 24027622
Alignment:
Q  191 tttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  24027707 tttttcccatcatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactagatttt 24027622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 3596335 - 3596229
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||  ||||| |||||||||    
T  3596335 gtttagcatgggaaagactaattttt-cccaccatgggaaaattagtttttaaccattagatcaaaccaagaacacatccttactatactccctcatcac 3596237  T
Q  269 tagatttt 276  Q
    ||||||||    
T  3596236 tagatttt 3596229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 8320881 - 8320987
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||||| |||||||||| ||||||| |||||||| ||| |||||| |||||||||    
T  8320881 gtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagattaaaccaataacacatccttaccatactccctcatcac 8320979  T
Q  269 tagatttt 276  Q
    ||||||||    
T  8320980 tagatttt 8320987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 24027193 - 24027299
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||| ||||||||||| ||||||||||||| || |||||||||||||||||||||||| ||| |||||| |||||||||    
T  24027193 gtttagcatgggaaaggctaatttt-tcccaccatggaaaagttagtttttaactattagatcaaaccaagaacacatccttaccatactccctcatcac 24027291  T
Q  269 tagatttt 276  Q
    ||||||||    
T  24027292 tagatttt 24027299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 29759603 - 29759709
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||||||| || |||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| || ||||||    
T  29759603 gtttagcatgggaaagactaattttttcc-actatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactcccccatcac 29759701  T
Q  269 tagatttt 276  Q
    ||||||||    
T  29759702 tagatttt 29759709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 7858832 - 7858755
Alignment:
Q  199 accatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    ||||||||||||||||||||| ||||||| ||||||||||||| ||||| ||| |||||| |||||||||||||||||    
T  7858832 accatgggaaagttagtttttaaccattaaatcaaaccaagaatacatccttaccatactccctcatcactagatttt 7858755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 33283192 - 33283275
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatt 274  Q
    |||| ||||| |||||||||| |  ||||||||||||||||||||  | |||||||| |||||||||||  ||||||||||||||    
T  33283192 ttttatcccatcatgggaaaggtt-tttttgaccattagatcaaatgaggaacacatttttatcatactctctcatcactagatt 33283275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 31078453 - 31078519
Alignment:
Q  161 taaggtcacgtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccatta 227  Q
    |||||| | |||||||||||||||| ||| |||||||| ||||||||||||||||||||| |||||||    
T  31078453 taaggtgaagtttagcatgggaaagactaattttttcc-accatgggaaagttagtttttaaccatta 31078519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 25993589 - 25993525
Alignment:
Q  191 tttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcat 255  Q
    |||||||||||||||||||| |  ||| ||||||||||||| |   |||||||||||||||||||    
T  25993589 tttttcccaccatgggaaagctcttttctgaccattagatctagtgaagaacacatctttatcat 25993525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 270
Target Start/End: Complemental strand, 33284044 - 33283965
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcacta 270  Q
    |||| |||||||||||||||| |  ||||||||| ||||||||||  | |||||||| |||||||||||  ||||||||||    
T  33284044 ttttatcccaccatgggaaaggtt-tttttgaccgttagatcaaatgaggaacacatttttatcatactctctcatcacta 33283965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 2319288 - 2319357
Alignment:
Q  185 gctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcat 255  Q
    |||| ||||||||||||||||||||| |  ||| |||||||| |||| ||  |||||||||||||||||||    
T  2319288 gctagttttttcccaccatgggaaagct-ttttctgaccattggatctaataaagaacacatctttatcat 2319357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 42654843 - 42654898
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccatt 226  Q
    |||||||||||||||| ||| |||||  ||||||||||||||||||||||| ||||||    
T  42654843 gtttagcatgggaaaggctagttttt--ccaccatgggaaagttagtttttaaccatt 42654898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 4789550 - 4789590
Alignment:
Q  193 tttcccaccatgggaaagttagtttttgaccattagatcaaa 234  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  4789550 tttcccaccatgggaaagtta-ttcttgaccattagatcaaa 4789590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 35262458 - 35262518
Alignment:
Q  170 gtttagcatgggaaagc-tacttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    ||||||||||||||||  || || ||||| ||||||||||||||| ||||||||||||||||    
T  35262458 gtttagcatgggaaaggataattgtttcctaccatgggaaagtta-tttttgaccattagat 35262518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 36912252 - 36912302
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttga 221  Q
    |||||||||||||||| ||| ||||||||||||||||||||||| ||||||||    
T  36912252 gtttagcatgggaaaggcta-ttttttcccaccatgggaaagtt-gtttttga 36912302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 170 - 317
Target Start/End: Complemental strand, 48594267 - 48594120
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  48594267 gtttagcattggaaagctacttttttcccatcatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcact 48594168  T
Q  270 agattttcttcttttgtcttcaacctcacaatcattaaccaagacggt 317  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  48594167 agattttcttcttttgtcttcaacctcacaaccatcaaccaagacggt 48594120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 170 - 317
Target Start/End: Complemental strand, 48598878 - 48598731
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  48598878 gtttagcattggaaagctacttttttcccatcatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcact 48598779  T
Q  270 agattttcttcttttgtcttcaacctcacaatcattaaccaagacggt 317  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  48598778 agattttcttcttttgtcttcaacctcacaaccatcaaccaagacggt 48598731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 170 - 317
Target Start/End: Complemental strand, 48153201 - 48153054
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | ||||||||    
T  48153201 gtttagcatgggaaagctacttttttcccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttatcatactccttcatcact 48153102  T
Q  270 agattttcttcttttgtcttcaacctcacaatcattaaccaagacggt 317  Q
    ||||||||||||||||||||||| ||||||| ||| || |||||||||    
T  48153101 agattttcttcttttgtcttcaatctcacaaccatcaatcaagacggt 48153054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 170 - 317
Target Start/End: Original strand, 50164243 - 50164390
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| |||||| |||    
T  50164243 gtttagcatgggaaaactacttttttcccactatgggaaagttagtttatgaccattagatcaaaccaagaatacatccttatcatactccctcattact 50164342  T
Q  270 agattttcttcttttgtcttcaacctcacaatcattaaccaagacggt 317  Q
    |||||||||||||||||||||||||||| || ||| ||||||||||||    
T  50164343 agattttcttcttttgtcttcaacctcataaccatcaaccaagacggt 50164390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 170 - 317
Target Start/End: Complemental strand, 50164751 - 50164604
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||| |||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| | ||||||||    
T  50164751 gtttagtatgggaaaactactttttttccaccataggaaagttagtttttgaccattagatcaaatcaagaacacatccttatcatactccttcatcact 50164652  T
Q  270 agattttcttcttttgtcttcaacctcacaatcattaaccaagacggt 317  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  50164651 agattttcttcttttgtcttcaacctcacaaccatcaaccaagacggt 50164604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 170 - 284
Target Start/End: Complemental strand, 28371745 - 28371631
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||    
T  28371745 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaaaaacacatccttatcatactccctcatcact 28371646  T
Q  270 agattttcttctttt 284  Q
    |||||||||||||||    
T  28371645 agattttcttctttt 28371631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 2820964 - 2821070
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  2820964 gtttaacatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcact 2821063  T
Q  270 agatttt 276  Q
    |||||||    
T  2821064 agatttt 2821070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 12800512 - 12800406
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  12800512 gtttagcatgggaaaactacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcact 12800413  T
Q  270 agatttt 276  Q
    |||||||    
T  12800412 agatttt 12800406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 317
Target Start/End: Complemental strand, 48589182 - 48589033
Alignment:
Q  170 gtttagcatgggaaagctacttttttc--ccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatca 267  Q
    ||||||||||||||| ||||||||||   | ||||||||||| |||||||| ||| ||||||||||| |||||||||||| |||||||||||| | ||||    
T  48589182 gtttagcatgggaaaactactttttttttctaccatgggaaaattagttttcgacgattagatcaaatcaagaacacatccttatcatacttcataatca 48589083  T
Q  268 ctagattttcttcttttgtcttcaacctcacaatcattaaccaagacggt 317  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  48589082 ctagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggt 48589033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 12799995 - 12800101
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  12799995 gtttagtatgggaaagctactttttttctaccatgggaaagttagtttttgaccattagatcaaaccaaaaacacatccttatcatacttcctcatcact 12800094  T
Q  270 agatttt 276  Q
    |||||||    
T  12800095 agatttt 12800101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 170 - 281
Target Start/End: Original strand, 28371205 - 28371316
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||| ||||||||| ||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  28371205 gtttagtatgggaaagttacttttttcctaccatgaaaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatactctctcatcact 28371304  T
Q  270 agattttcttct 281  Q
    ||||||||||||    
T  28371305 agattttcttct 28371316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 2821531 - 2821425
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||| ||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  2821531 gtttagtatgagaaaactacttttttcccaccatgggaaagttaatttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcact 2821432  T
Q  270 agatttt 276  Q
    |||||||    
T  2821431 agatttt 2821425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 33631131 - 33631026
Alignment:
Q  171 tttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcacta 270  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||||| |||||||||||    
T  33631131 tttagcatgggaaaactacttttttcccaccatgggaaaattagtttttgaccattagatcaaacgaagaacacatccttaccatactccctcatcacta 33631032  T
Q  271 gatttt 276  Q
    ||||||    
T  33631031 gatttt 33631026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 38328928 - 38328822
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| ||||| |||| ||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| |||||||||    
T  38328928 gtttagcatgggaaagactaattttt-cccatcatgggaaagttagtttttaatcattagatcaaaccaagaacacatccttatcatactccctcatcac 38328830  T
Q  269 tagatttt 276  Q
    ||||||||    
T  38328829 tagatttt 38328822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 43755855 - 43755961
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||||||     
T  43755855 gtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcat 43755953  T
Q  269 tagatttt 276  Q
    ||||||||    
T  43755954 tagatttt 43755961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 43756389 - 43756283
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||| ||| |||||| |||||||||    
T  43756389 gtttagcatgggaaagactaattttttcc-accatgggaaagttagtttttaaccattaaatcaaaccaagaacacatccttaccatactccctcatcac 43756291  T
Q  269 tagatttt 276  Q
    ||||||||    
T  43756290 tagatttt 43756283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 38469327 - 38469221
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| ||| |||||| | |||||||    
T  38469327 gtttagcatgggaaaggctaattttttcc-accatgggaaagttagtttttaaccattagatcaaatcaagaacacatccttaccatactccatcatcac 38469229  T
Q  269 tagatttt 276  Q
    ||||||||    
T  38469228 tagatttt 38469221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 38468912 - 38469018
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||| || ||| |||||||||||| ||| |||||| |||||||||    
T  38468912 gtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattatattaaatcaagaacacatccttaccatactccctcatcac 38469010  T
Q  269 tagatttt 276  Q
    ||||||||    
T  38469011 tagatttt 38469018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 17151921 - 17151861
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17151921 gtttagcatgggaaagctactttttttccaccatgggaaagttagtttttgaccattagat 17151861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 192 - 276
Target Start/End: Original strand, 38328415 - 38328499
Alignment:
Q  192 ttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    |||||| | ||||| ||||||||||||| ||||||||||||||||||||||| ||| ||| |||||| |||||||||||||||||    
T  38328415 ttttcctatcatggaaaagttagtttttaaccattagatcaaaccaagaacaaatccttaccatactccctcatcactagatttt 38328499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 33630483 - 33630540
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccatta 227  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  33630483 gtttagcatgggaaagctacttattttccaccatgggaaagttagtttttgaccatta 33630540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 32537672 - 32537715
Alignment:
Q  191 tttttcccaccatgggaaagttagtttttgaccattagatcaaa 234  Q
    ||||||||||||||||||||||||||||| |||||| |||||||    
T  32537672 tttttcccaccatgggaaagttagtttttaaccattggatcaaa 32537715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 17151008 - 17151068
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    ||||||||||||||||     ||||||||||||||||||||||| |||||||||| |||||    
T  17151008 gtttagcatgggaaaggctggtttttcccaccatgggaaagttattttttgaccactagat 17151068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 32538544 - 32538488
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccatt 226  Q
    |||||||||||||||| ||| ||||| |||||||||| ||||||||||||| ||||||    
T  32538544 gtttagcatgggaaaggctaattttt-cccaccatggaaaagttagtttttaaccatt 32538488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 219
Target Start/End: Complemental strand, 45065407 - 45065378
Alignment:
Q  190 ttttttcccaccatgggaaagttagttttt 219  Q
    ||||||||||||||||||||||||||||||    
T  45065407 ttttttcccaccatgggaaagttagttttt 45065378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 170 - 317
Target Start/End: Original strand, 14197665 - 14197812
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||    
T  14197665 gtttagcatgggaaagttacttttttcccaccatgggaaagttagtttttgaccattagatcaaagcaagaacacatccttatcatactccctcatcact 14197764  T
Q  270 agattttcttcttttgtcttcaacctcacaatcattaaccaagacggt 317  Q
    ||||||||||||||||||||||||||||||| ||| |||||| |||||    
T  14197765 agattttcttcttttgtcttcaacctcacaaccatcaaccaatacggt 14197812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 170 - 317
Target Start/End: Original strand, 39439764 - 39439911
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||| |||| |||||||||||||||||| ||| | |||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||    
T  39439764 gtttagtatggaaaagctacttttttcccatcatagaaaagttagtttttgactattagatcaaaccaagaacacatccttatcatactccctcatcact 39439863  T
Q  270 agattttcttcttttgtcttcaacctcacaatcattaaccaagacggt 317  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||||||    
T  39439864 agattttcttcttttgtctccaacctcacaaccatcaaccaagacggt 39439911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 37657853 - 37657959
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37657853 gtttagcatgggaaagctactttttttctaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatactccctcatcact 37657952  T
Q  270 agatttt 276  Q
    |||||||    
T  37657953 agatttt 37657959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 170 - 317
Target Start/End: Complemental strand, 39440640 - 39440494
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||| |||| |||||||||||| |||||   ||||||||||||||||||||| ||||||||||||||||||| |||| ||||| ||||||||||    
T  39440640 gtttagcatgagaaaactacttttttcc-accataaaaaagttagtttttgaccattaaatcaaaccaagaacacatccttataatactccctcatcact 39440542  T
Q  270 agattttcttcttttgtcttcaacctcacaatcattaaccaagacggt 317  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||    
T  39440541 agattttcttcttttgtcttcaacctcacaaccatcaatcaagacggt 39440494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 30846022 - 30846128
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  30846022 gtttagcatgggaaagactaatttt-tcccaccataggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcac 30846120  T
Q  269 tagatttt 276  Q
    ||||||||    
T  30846121 tagatttt 30846128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 41714609 - 41714715
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||||||||||||||||| ||||||  || ||||  ||||||||||||||| ||||||||||||||||||||||||| |||||||| | ||||||||||    
T  41714609 gtttagcatgggaaagctatttttttttcatcatgaaaaagttagtttttgatcattagatcaaaccaagaacacatccttatcataatccctcatcact 41714708  T
Q  270 agatttt 276  Q
    |||||||    
T  41714709 agatttt 41714715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 30846538 - 30846432
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| ||| ||| |||||| |||||||||    
T  30846538 gtttagcatgggaaaggctaattttttcc-accatgggaaaattagtttttaaccattagatcaaaccaagaacatatccttaccatactccctcatcac 30846440  T
Q  269 tagatttt 276  Q
    ||||||||    
T  30846439 tagatttt 30846432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 31408217 - 31408164
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgacc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31408217 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgacc 31408164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 41715272 - 41715203
Alignment:
Q  207 aaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||| | |||||||||||||||    
T  41715272 aaagttagtttttgaccattagatcaaaccaagaacatatccttatcatactccatcatcactagatttt 41715203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 37658549 - 37658480
Alignment:
Q  207 aaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    ||||||||||||| ||||||||||||||| |||||||| || ||| |||||| | |||| ||||||||||    
T  37658549 aaagttagttttttaccattagatcaaacgaagaacacgtccttaccatactccttcattactagatttt 37658480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 35759260 - 35759220
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  35759260 tttttccccaccatgggaaagttagtttttaaccattagat 35759220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 41348171 - 41348211
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  41348171 tttttccccaccatgggaaagttagtttttaaccattagat 41348211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 42573606 - 42573643
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccatta 227  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  42573606 ttttttcccaccatgagaaaattagtttttgaccatta 42573643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 276
Target Start/End: Complemental strand, 30272979 - 30272892
Alignment:
Q  188 acttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    |||||||||||| ||||||||||| || |||| ||||||||||  ||  ||||| |||  ||||||||||| |||||  ||||||||||    
T  30272979 acttttttcccatcatgggaaagtaag-ttttaaccattagattcaatgaagaatacacttttatcatactccctcaatactagatttt 30272892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 41092199 - 41092235
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccatt 226  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  41092199 ttttttcccaccatggaaaagttagtttttaaccatt 41092235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 170 - 317
Target Start/End: Original strand, 52532129 - 52532276
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||  |||||||||||||||| ||||||||| ||||| ||||||||||    
T  52532129 gtttagcatgggaaaactacttttttcccaccatgggaaagtttgtttttgaccagcagatcaaaccaagaacgcatctttattatactccctcatcact 52532228  T
Q  270 agattttcttcttttgtcttcaacctcacaatcattaaccaagacggt 317  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  52532229 agattttcttcttttgtcttcaacctcacaaccatcaaccaagacggt 52532276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 170 - 317
Target Start/End: Complemental strand, 5259370 - 5259223
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||| |||| ||||||||||  || |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||    
T  5259370 gtttagcatgagaaaactacttttttttcatcatgggaaagttagttttcgaccattagatcaaatcaagaacacatctttatcatactccttcatcact 5259271  T
Q  270 agattttcttcttttgtcttcaacctcacaatcattaaccaagacggt 317  Q
    ||||||||||||||||| |||||||||||||  || ||||||||||||    
T  5259270 agattttcttcttttgttttcaacctcacaactatcaaccaagacggt 5259223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 170 - 313
Target Start/End: Complemental strand, 52532472 - 52532329
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||| ||||| |||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||| || | ||||| |||||||| |    
T  52532472 gtttaacatggaaaagctacttttttcccaccgttggaaagttagtttttgaccagtagatcaaaccaagaacacatccttgttatactccctcatcatt 52532373  T
Q  270 agattttcttcttttgtcttcaacctcacaatcattaaccaaga 313  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||    
T  52532372 agattttcttcttttgtcttcaacctcacaaccatcaaccaaga 52532329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 19860336 - 19860442
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||| ||||||||||    
T  19860336 gtttagcatgggaaagctatttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatacttaccatactccctcatcact 19860435  T
Q  270 agatttt 276  Q
    |||||||    
T  19860436 agatttt 19860442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 19860914 - 19860808
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||    
T  19860914 gtttagcatgggaaacctacttttttcccaccgtgggaaagttagtttttgaccattagatcaaaccaagaacacatccttttcatactccctcatcact 19860815  T
Q  270 agatttt 276  Q
    |||||||    
T  19860814 agatttt 19860808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 161 - 276
Target Start/End: Original strand, 20174967 - 20175082
Alignment:
Q  161 taaggtcacgtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatactt 259  Q
    |||||| | |||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||     
T  20174967 taaggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttatcatactc 20175065  T
Q  260 cctcatcactagatttt 276  Q
    |||||||||||||||||    
T  20175066 cctcatcactagatttt 20175082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 5235380 - 5235486
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  5235380 gtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttatcatactcactcatcac 5235478  T
Q  269 tagatttt 276  Q
    ||||||||    
T  5235479 tagatttt 5235486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 6934544 - 6934438
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  6934544 gtttagcatgggaaagactaattttttcc-accatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcac 6934446  T
Q  269 tagatttt 276  Q
    ||||||||    
T  6934445 tagatttt 6934438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 30213957 - 30213851
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||| ||||||||| |||||||||| | ||||||  ||||||||||||||||||||||||||||||||||| | || ||||||||||| ||||||||||    
T  30213957 gtttatcatgggaaaactactttttttctaccatgaaaaagttagtttttgaccattagatcaaaccaagaatatatttttatcatactccctcatcact 30213858  T
Q  270 agatttt 276  Q
    |||||||    
T  30213857 agatttt 30213851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 6933827 - 6933933
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  6933827 gtttagcatgggaaagactaattttttcc-atcatggaaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcac 6933925  T
Q  269 tagatttt 276  Q
    ||||||||    
T  6933926 tagatttt 6933933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 5235907 - 5235822
Alignment:
Q  191 tttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  5235907 tttttcctaccataggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactagatttt 5235822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 25655673 - 25655620
Alignment:
Q  178 tgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  25655673 tgggaaagactagttttttcccaccatgggaaagttagtttttgaccattagat 25655620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 11680303 - 11680343
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11680303 ttttttcccaccatgggaaagttagtttttgaccattagat 11680343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 11688582 - 11688622
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11688582 ttttttcccaccatgggaaagttagtttttgaccattagat 11688622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 12590229 - 12590184
Alignment:
Q  185 gctacttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||    
T  12590229 gctagtttttttccaccatgggaaagttagtttttgaccattagat 12590184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 46764279 - 46764316
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccatta 227  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46764279 ttttttcccaccatgggaaagttagtttttgaccatta 46764316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 20175421 - 20175361
Alignment:
Q  216 ttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    |||| |||||||||||||||||| |||||||| ||| ||| || |||||||||||||||||    
T  20175421 ttttaaccattagatcaaaccaataacacatccttaccatgctccctcatcactagatttt 20175361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 304
Target Start/End: Complemental strand, 35428177 - 35428066
Alignment:
Q  193 tttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatt-ttcttcttttgtcttca 291  Q
    |||||||| ||||||||||| |||  ||||||| ||||| ||  |||||||||| |||||||| || ||||| ||||| ||| || |||| || ||||||    
T  35428177 tttcccactatgggaaagtt-gttcatgaccatcagatctaattaagaacacatttttatcatgctccctcaacactaaattatttttctcttatcttca 35428079  T
Q  292 acctcacaatcat 304  Q
    |||||||||||||    
T  35428078 acctcacaatcat 35428066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 3847911 - 3847957
Alignment:
Q  188 acttttttcccaccatgggaaagttagtttttgaccattagatcaaa 234  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||    
T  3847911 acttttttcccaccatgggaaagtatttttttgaccattagatcaaa 3847957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 31910581 - 31910618
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccatta 227  Q
    |||||||||||||||||||||||||||||| |||||||    
T  31910581 ttttttcccaccatgggaaagttagtttttaaccatta 31910618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 39412771 - 39412835
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaa 234  Q
    |||||||||||||||| ||| ||||| |||| ||||||||||||||||||| |||||| |||||||    
T  39412771 gtttagcatgggaaaggctaattttt-cccatcatgggaaagttagtttttaaccattggatcaaa 39412835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 52758736 - 52758691
Alignment:
Q  185 gctacttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    |||| ||||||| || |||||||||||||||||||| |||||||||    
T  52758736 gctagttttttctcatcatgggaaagttagtttttggccattagat 52758691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 3167519 - 3167463
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccatt 226  Q
    |||||||||||||||| |   ||||||||||||||||||||||  ||||| ||||||    
T  3167519 gtttagcatgggaaagattactttttcccaccatgggaaagttgttttttaaccatt 3167463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 33370917 - 33370873
Alignment:
Q  170 gtttagcatgggaaagc-tacttttttcccaccatgggaaagtta 213  Q
    ||||||||||||||||  ||||| |||||||||||||||||||||    
T  33370917 gtttagcatgggaaaggatacttgtttcccaccatgggaaagtta 33370873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 28535513 - 28535376
Alignment:
Q  163 aggtcacgtttagcatgggaaagctacttttttc-ccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcc 261  Q
    |||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28535513 aggtcacgtttagcatgggaaagctacttttttttccaccataggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatacttcc 28535414  T
Q  262 tcatcactagattttcttcttttgtcttcaacctcaca 299  Q
    |||||| || ||||||||||||||||||||||||||||    
T  28535413 tcatcattatattttcttcttttgtcttcaacctcaca 28535376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 28983334 - 28983228
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  28983334 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcact 28983235  T
Q  270 agatttt 276  Q
    |||||||    
T  28983234 agatttt 28983228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 34717797 - 34717691
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  34717797 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcact 34717698  T
Q  270 agatttt 276  Q
    |||||||    
T  34717697 agatttt 34717691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 19062864 - 19062759
Alignment:
Q  171 tttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcacta 270  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||    
T  19062864 tttagcatgggaaagctacttttttcccaccatgagaaagttagtttttgaccattagatcaaaccaaaaacacatccttatcatactccctcatcacta 19062765  T
Q  271 gatttt 276  Q
    ||||||    
T  19062764 gatttt 19062759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 34717248 - 34717354
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| || ||||||||||  |||||||||    
T  34717248 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgatcattagatcaaatcaagaacacgtccttatcatactctctcatcact 34717347  T
Q  270 agatttt 276  Q
    |||||||    
T  34717348 agatttt 34717354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 28982788 - 28982893
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||||||||||||| |||||||||||  | |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||    
T  28982788 gtttagcatgggaaaactacttttttct-atcatgggaaagttagtttttgaccattcgatcaaaccaagaacacatccttatcatactccctcatcact 28982886  T
Q  270 agatttt 276  Q
    |||||||    
T  28982887 agatttt 28982893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 7635677 - 7635571
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  7635677 gtttagcatgggaaagactaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcac 7635579  T
Q  269 tagatttt 276  Q
    ||||||||    
T  7635578 tagatttt 7635571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 7635130 - 7635236
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| |||||| |||||||||    
T  7635130 gtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaactaagaacacatccttaccatactccctcatcac 7635228  T
Q  269 tagatttt 276  Q
    ||||||||    
T  7635229 tagatttt 7635236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 18290537 - 18290431
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| |||||| |||||||||    
T  18290537 gtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacaaatccttaccatactccctcatcac 18290439  T
Q  269 tagatttt 276  Q
    ||||||||    
T  18290438 tagatttt 18290431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 18290221 - 18290327
Alignment:
Q  170 gtttagcatgggaaa-gctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    ||||||||||||||| |||| |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||| |||||| |||||||||    
T  18290221 gtttagcatgggaaaagctaatttt-tcccaccatgggaaagttaatttttaaccattagatcaaaccaagaacaaatccttaccatactccctcatcac 18290319  T
Q  269 tagatttt 276  Q
    ||||||||    
T  18290320 tagatttt 18290327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 2925014 - 2924952
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatca 232  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2925014 gtttagcatgggaaagctacttttttcccaccataggaaagttagtttttgaccattagatca 2924952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 4348853 - 4348959
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||| ||||| |   ||||| |||||||  ||||||| |||||| ||||||||||||||||||||||||||| ||| |||||| ||||||||||    
T  4348853 gtttagcatgagaaagattaattttttccaccataagaaagtttgtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcact 4348952  T
Q  270 agatttt 276  Q
    |||||||    
T  4348953 agatttt 4348959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 12999498 - 12999413
Alignment:
Q  191 tttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    |||||||||||||| | |||||||||||| ||||||||||||||||||||||| ||| ||| |||||| ||||| || ||||||||    
T  12999498 tttttcccaccatgagcaagttagtttttaaccattagatcaaaccaagaacatatccttaccatactccctcaccattagatttt 12999413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 10608341 - 10608301
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10608341 ttttttcccaccatgggaaagttagtttttgaccattagat 10608301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 14496450 - 14496489
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaa 209  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  14496450 gtttagcatgggaaagctacttttttctcaccatgggaaa 14496489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 930937 - 930991
Alignment:
Q  178 tgggaaag-ctacttttttcccaccatgggaaa-gttagtttttgaccattagat 230  Q
    |||||||| ||| |||||||||||||||||||| |||||||||||||||||||||    
T  930937 tgggaaagactagttttttcccaccatgggaaaagttagtttttgaccattagat 930991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 18605901 - 18605837
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaa 234  Q
    |||||||||||||||| ||| |||||||| |||||||||||||| |||||| |||||| |||||||    
T  18605901 gtttagcatgggaaaggctaattttttcc-accatgggaaagtttgtttttaaccattggatcaaa 18605837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 199
Target Start/End: Complemental strand, 14496512 - 14496483
Alignment:
Q  170 gtttagcatgggaaagctacttttttccca 199  Q
    ||||||||||||||||||||||||||||||    
T  14496512 gtttagcatgggaaagctacttttttccca 14496483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 1034748 - 1034788
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    ||||| |||||||| ||||||||||||||| ||||||||||    
T  1034748 tttttccccaccataggaaagttagtttttaaccattagat 1034788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 25371175 - 25371238
Alignment:
Q  170 gtttagcatgggaaagcta-cttttttcccaccatgggaaagttagtttttgaccattagatcaa 233  Q
    ||||||||||||||||  | ||| ||||||||||||||||| | | |||||||||||||||||||    
T  25371175 gtttagcatgggaaagtgaacttgtttcccaccatgggaaaat-attttttgaccattagatcaa 25371238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 170 - 317
Target Start/End: Complemental strand, 42973 - 42827
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||| |||| |||||||||||| |||||   ||||||||||||||||||||| ||||||||||||||||||| |||| ||||| ||||||||||    
T  42973 gtttagcatgagaaaactacttttttcc-accataaaaaagttagtttttgaccattaaatcaaaccaagaacacatccttataatactccctcatcact 42875  T
Q  270 agattttcttcttttgtcttcaacctcacaatcattaaccaagacggt 317  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||    
T  42874 agattttcttcttttgtcttcaacctcacaaccatcaatcaagacggt 42827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 7e-44; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 20560323 - 20560217
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  20560323 gtttagcatgggaaagctatatttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcact 20560224  T
Q  270 agatttt 276  Q
    |||||||    
T  20560223 agatttt 20560217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 161 - 276
Target Start/End: Original strand, 20559743 - 20559858
Alignment:
Q  161 taaggtcacgtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttc 260  Q
    |||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |    
T  20559743 taaggtgaggtttagcatgggaaagctattttttttccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatactcc 20559842  T
Q  261 ctcatcactagatttt 276  Q
    ||||||||||||||||    
T  20559843 ctcatcactagatttt 20559858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 170 - 281
Target Start/End: Complemental strand, 42901178 - 42901067
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||    
T  42901178 gtttagcatgaaaaagctatttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacattgttatcatactccctcatcact 42901079  T
Q  270 agattttcttct 281  Q
    ||||||||||||    
T  42901078 agattttcttct 42901067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 33139780 - 33139886
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  33139780 gtttagcatgggaaagctactttttttccaccatgagaaagttggtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcact 33139879  T
Q  270 agatttt 276  Q
    |||||||    
T  33139880 agatttt 33139886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 33140336 - 33140230
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  33140336 gtttagtatgggaaagttacttttttcccaccatgggaaagttagtttttgaccattagatcaaactaagaacacatccttatcatactccctcatcact 33140237  T
Q  270 agatttt 276  Q
    |||||||    
T  33140236 agatttt 33140230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 4179643 - 4179749
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||    
T  4179643 gtttagcatgagaaaactatttttttcccaccatgggaaagttagtatttgaccattagatcaaaccaagaacacatccttaccatactccctcatcact 4179742  T
Q  270 agatttt 276  Q
    |||||||    
T  4179743 agatttt 4179749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 4180380 - 4180274
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| ||||||||||    
T  4180380 gtttaacatggaaaagctacatttttcccaccatgggaaagttagtttttgaccattagatcaaactaagaacacatccttaccatactccctcatcact 4180281  T
Q  270 agatttt 276  Q
    |||||||    
T  4180280 agatttt 4180274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 170 - 317
Target Start/End: Original strand, 35211903 - 35212055
Alignment:
Q  170 gtttagcatgggaaagctacttttttc-----ccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctca 264  Q
    |||||| |||||||||||||||||||      | || |||| ||||||||||||||||||||| |||||| |||||||||||  |||||||||||| |||    
T  35211903 gtttagtatgggaaagctacttttttttttttctactatggaaaagttagtttttgaccattaaatcaaatcaagaacacattcttatcatacttcatca 35212002  T
Q  265 tcactagattttcttcttttgtcttcaacctcacaatcattaaccaagacggt 317  Q
    ||| |||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  35212003 tcattagattttcttcttttgtcttcaacctcacacccatcaaccaagacggt 35212055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 170 - 284
Target Start/End: Original strand, 42900653 - 42900767
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||||||||| |||| |||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||   ||||||||    
T  42900653 gtttagcatggaaaaggtacttttttttcaccatgggaaagttagtttttgaccattagatcaaatcaagaacacatccttatcatactcgttcatcact 42900752  T
Q  270 agattttcttctttt 284  Q
    | |||||||||||||    
T  42900753 aaattttcttctttt 42900767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 40641212 - 40641106
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||||||||| |||||||||   || ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||| ||||||    
T  40641212 gtttagcatgggaaagttactttttttttactatgggaaagttagtttttgaccattagatcaaatcaagaacacatccttatcatactcccttatcact 40641113  T
Q  270 agatttt 276  Q
    |||||||    
T  40641112 agatttt 40641106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 191 - 276
Target Start/End: Original strand, 30414208 - 30414293
Alignment:
Q  191 tttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  30414208 tttttcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactagatttt 30414293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 25137418 - 25137524
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||||| |||||||||||||| ||| |||||||| ||| |||||| |||||||||    
T  25137418 gtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaatcaataacacatccttaccatactccctcatcac 25137516  T
Q  269 tagatttt 276  Q
    ||||||||    
T  25137517 tagatttt 25137524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 40640659 - 40640762
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    |||||||||||||||  ||||||||||||||   |||||||||||||||| | ||||| ||||||||||||||||||| ||||||| || ||||||||||    
T  40640659 gtttagcatgggaaaattacttttttcccac---gggaaagttagtttttaatcattaaatcaaaccaagaacacatcattatcattctccctcatcact 40640755  T
Q  270 agatttt 276  Q
    |||||||    
T  40640756 agatttt 40640762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 25137967 - 25137860
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaa-ccaagaacacatctttatcatacttcctcatca 267  Q
    |||||||||||||||| ||| ||||| |||||||||||||| ||||||||| |||||||||||||| | ||||||||||| ||| |||||| ||||||||    
T  25137967 gtttagcatgggaaagactaattttt-cccaccatgggaaaattagtttttaaccattagatcaaatcaaagaacacatccttaccatactccctcatca 25137869  T
Q  268 ctagatttt 276  Q
    |||||||||    
T  25137868 ctagatttt 25137860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 24322372 - 24322289
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatt 274  Q
    |||| |||||||||||||||| |  ||||||||| ||||||||||  | |||||||| |||||||||||  ||||||||||||||    
T  24322372 ttttatcccaccatgggaaaggtt-tttttgaccgttagatcaaatgaggaacacatttttatcatactctctcatcactagatt 24322289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 29006374 - 29006414
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  29006374 ttttttcccaccatgggaaagttagtttttaaccattagat 29006414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 29007220 - 29007180
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  29007220 ttttttcccaccatgggaaagttagtttttaaccattagat 29007180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 33686932 - 33686996
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaa 234  Q
    |||||||||||||||| |   ||||||||||||||||||||||||||||| |||||  |||||||    
T  33686932 gtttagcatgggaaaggttaatttttcccaccatgggaaagttagtttttaaccatcggatcaaa 33686996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 45887301 - 45887370
Alignment:
Q  185 gctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcat 255  Q
    |||| ||||||||||||||||||||| |  |||||||||||| |||| ||  |||||||||||||||||||    
T  45887301 gctagttttttcccaccatgggaaagctt-tttttgaccattggatctaataaagaacacatctttatcat 45887370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 44896060 - 44896113
Alignment:
Q  178 tgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    |||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||    
T  44896060 tgggaaagactagtttttccccaccatgggaaagttagtttttaaccattagat 44896113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 41224864 - 41224828
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccatt 226  Q
    |||||||||||||||||||||||||||||| ||||||    
T  41224864 ttttttcccaccatgggaaagttagtttttaaccatt 41224828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 35613264 - 35613225
Alignment:
Q  191 tttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  35613264 tttttcccaccatggaaaagttagtttttgaccactagat 35613225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 4985420 - 4985351
Alignment:
Q  185 gctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcat 255  Q
    |||| ||||||||||||||||||||| |  ||| |||||||| |||| ||  |||||||||||||||||||    
T  4985420 gctagttttttcccaccatgggaaagct-ttttctgaccattggatctaataaagaacacatctttatcat 4985351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 4989518 - 4989449
Alignment:
Q  185 gctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcat 255  Q
    |||| ||||||||||||||||||||| |  ||| |||||||| |||| ||  |||||||||||||||||||    
T  4989518 gctagttttttcccaccatgggaaagct-ttttctgaccattggatctaataaagaacacatctttatcat 4989449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 45888006 - 45887937
Alignment:
Q  185 gctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcat 255  Q
    |||| ||||||||||||||||||||| |  ||| |||||||| |||| ||  |||||||||||||||||||    
T  45888006 gctagttttttcccaccatgggaaagct-ttttctgaccattggatctaataaagaacacatctttatcat 45887937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 47331979 - 47331910
Alignment:
Q  185 gctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcat 255  Q
    |||| ||||||||||||||||||||| |  ||| |||||||| |||| ||  |||||||||||||||||||    
T  47331979 gctagttttttcccaccatgggaaagct-ttttctgaccattggatctaataaagaacacatctttatcat 47331910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 33687791 - 33687735
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccatt 226  Q
    |||||||||||||||| ||| |||||||| |||||| |||||||||||||| ||||||    
T  33687791 gtttagcatgggaaaggctaattttttcc-accatgagaaagttagtttttaaccatt 33687735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 42607111 - 42607151
Alignment:
Q  193 tttcccaccatgggaaagttagtttttgaccattagatcaaa 234  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  42607111 tttcccaccatgggaaagtt-gtttttgtccattagatcaaa 42607151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 47331284 - 47331348
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcat 255  Q
    ||||||||||||||| |||||||  ||| |||||||| |||| ||  |||||||||||||||||||    
T  47331284 ttttttcccaccatgagaaagttt-tttctgaccattggatctaataaagaacacatctttatcat 47331348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 29314608 - 29314644
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccatt 226  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  29314608 tttttttccaccatgggaaagttagtttttaaccatt 29314644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 7e-44; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 3705343 - 3705449
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||    
T  3705343 gtttagcataggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccatatcatactccctcatcact 3705442  T
Q  270 agatttt 276  Q
    |||||||    
T  3705443 agatttt 3705449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 16681572 - 16681678
Alignment:
Q  170 gtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcact 269  Q
    ||||||||||||||||||| || ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||    
T  16681572 gtttagcatgggaaagctagttatttcccatcatgggaaagttagtttttggccattagatcaaaccaagaacacatccttatcatactccctcatcact 16681671  T
Q  270 agatttt 276  Q
    |||||||    
T  16681672 agatttt 16681678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 3705868 - 3705760
Alignment:
Q  170 gtttagcatgggaaagctacttttttc--ccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatca 267  Q
    ||||||||||||||  ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||    
T  3705868 gtttagcatgggaagactactttttttttccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccttcatca 3705769  T
Q  268 ctagatttt 276  Q
    |||||||||    
T  3705768 ctagatttt 3705760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 30899396 - 30899502
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  30899396 gtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcac 30899494  T
Q  269 tagatttt 276  Q
    ||||||||    
T  30899495 tagatttt 30899502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 6610085 - 6609979
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||| ||| |||||| |||||||||    
T  6610085 gtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagattaaaccaagaacacatccttaccatactccctcatcac 6609987  T
Q  269 tagatttt 276  Q
    ||||||||    
T  6609986 tagatttt 6609979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 7994615 - 7994509
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||||| |    
T  7994615 gtttagcatgggaaaggctaattttttcc-accatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcgc 7994517  T
Q  269 tagatttt 276  Q
    ||||||||    
T  7994516 tagatttt 7994509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 15562082 - 15561976
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||| ||| |||||| |||||||||    
T  15562082 gtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagattaaaccaagaacacatccttaccatactccctcatcac 15561984  T
Q  269 tagatttt 276  Q
    ||||||||    
T  15561983 tagatttt 15561976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 16903939 - 16903833
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| |||||| |||||||||    
T  16903939 gtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaactaagaacacatccttaccatactccctcatcac 16903841  T
Q  269 tagatttt 276  Q
    ||||||||    
T  16903840 tagatttt 16903833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 16992434 - 16992327
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| ||||| | |||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| |||||| |||||||||    
T  16992434 gtttagcatgggaaaggctaatttttcctcaccatgggaaagttagtttttaaccattagatcaaactaagaacacatccttaccatactccctcatcac 16992335  T
Q  269 tagatttt 276  Q
    ||||||||    
T  16992334 tagatttt 16992327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 191 - 276
Target Start/End: Original strand, 7994082 - 7994167
Alignment:
Q  191 tttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  7994082 tttttcccatcatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactagatttt 7994167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 15561547 - 15561653
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||| ||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||| |||||| |||||||||    
T  15561547 gtttagcatgggaaagactaatttt-tcccaccattggaaagttagtttttaaccattagatcaaactaagaacacatccttaccatactccctcatcac 15561645  T
Q  269 tagatttt 276  Q
    ||||||||    
T  15561646 tagatttt 15561653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 191 - 276
Target Start/End: Original strand, 16903425 - 16903509
Alignment:
Q  191 tttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| ||| |||||| |||||||||||||||||    
T  16903425 tttttcccaccatggaaaagttagtttttaaccattagatcaaa-caagaacacatccttaccatactccctcatcactagatttt 16903509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 6609557 - 6609663
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||| ||||||||||| ||||||||||||| |||||||||| ||||||| |||||||| ||| |||||| |||| ||||    
T  6609557 gtttagcatgggaaaggctaatttt-tcccaccatggaaaagttagtttttaaccattagatgaaaccaacaacacatccttaccatactccctcttcac 6609655  T
Q  269 tagatttt 276  Q
    ||||||||    
T  6609656 tagatttt 6609663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 30899943 - 30899837
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| ||||| |||||||||  ||||||||||||| || |||||||||||||||||||||||| ||| |||||| ||||||||     
T  30899943 gtttagcatgggaaaggctaattttt-cccaccatgaaaaagttagtttttaactattagatcaaaccaagaacacatccttaccatactccctcatcat 30899845  T
Q  269 tagatttt 276  Q
    ||||||||    
T  30899844 tagatttt 30899837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 161 - 263
Target Start/End: Complemental strand, 37996634 - 37996532
Alignment:
Q  161 taaggtcacgtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatactt 259  Q
    |||||| | |||||||||||||||| ||| ||||| |||| ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||     
T  37996634 taaggtgaagtttagcatgggaaaggctaattttt-cccatcatgggaaagttagtttttaaccattagatcaaatcaagaacacatccttatcatactc 37996536  T
Q  260 cctc 263  Q
    ||||    
T  37996535 cctc 37996532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 265
Target Start/End: Complemental strand, 16682298 - 16682213
Alignment:
Q  181 gaaagctactttttt-cccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcat 265  Q
    ||||||||||||||| |||||  ||| |||||||||||||||| |||| ||||||| |||||||||||| || |||||| ||||||    
T  16682298 gaaagctactttttttcccacattggcaaagttagtttttgactattaaatcaaacgaagaacacatctataccatactccctcat 16682213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 41984749 - 41984819
Alignment:
Q  185 gctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcata 256  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||  ||||||||||||||||||||    
T  41984749 gctagttttttctcaccatgggaaagcta-tttctgaccattagatctaataaagaacacatctttatcata 41984819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 34617659 - 34617719
Alignment:
Q  170 gtttagcatgggaaagc-tacttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    ||||||||||||||||  || || ||||||||||||||||||||| ||||||||||||||||    
T  34617659 gtttagcatgggaaaggataattgtttcccaccatgggaaagtta-tttttgaccattagat 34617719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 40992249 - 40992285
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccatt 226  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  40992249 ttttttcctaccatgggaaagttagtttttaaccatt 40992285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 4139 - 4245
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  4139 gtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcac 4237  T
Q  269 tagatttt 276  Q
    ||||||||    
T  4238 tagatttt 4245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 4666 - 4560
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| |||||||| | ||||||||||||||||||| || |||||||||||||||||||||||| ||| |||||| |||||||||    
T  4666 gtttagcatgggaaagactaattttttcc-atcatgggaaagttagtttttaacaattagatcaaaccaagaacacatccttaccatactccctcatcac 4568  T
Q  269 tagatttt 276  Q
    ||||||||    
T  4567 tagatttt 4560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 61580 - 61686
Alignment:
Q  170 gtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcac 268  Q
    |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||    
T  61580 gtttagcatgggaaaggctaattttt-cccatcatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttctcatactccctcatcac 61678  T
Q  269 tagatttt 276  Q
    ||||||||    
T  61679 tagatttt 61686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 62089 - 62023
Alignment:
Q  210 gttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    |||||||||| | |||||||||||||||||| |||||| ||| |||||| |||||||||||||||||    
T  62089 gttagttttttagcattagatcaaaccaagatcacatccttaccatactccctcatcactagatttt 62023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 202304 - 202219
Alignment:
Q  191 tttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatacttcctcatcactagatttt 276  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  202304 tttttcccaccatggaaaagttagtttttaaccattaaatcaaaccaagaacacatccttaccatactccctcatcactagatttt 202219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 22270 - 22203
Alignment:
Q  169 cgtttagcatgggaaagctacttttttc-ccaccatgggaaagttagtttttgaccattagatcaaac 235  Q
    |||||||||||||||||||||||||||  ||||||||||||| || ||||||||||||||||||||||    
T  22270 cgtttagcatgggaaagctacttttttttccaccatgggaaaatttgtttttgaccattagatcaaac 22203  T

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Target: scaffold0155 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 17366 - 17410
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccattagatcaaa 234  Q
    |||||||||||||||||||||||||||||| |||||| |||||||    
T  17366 ttttttcccaccatgggaaagttagtttttaaccatttgatcaaa 17410  T

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Target: scaffold0180 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 23113 - 23073
Alignment:
Q  190 ttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    |||||||||| ||||||||||||||||||  ||||||||||    
T  23113 ttttttcccatcatgggaaagttagttttgaaccattagat 23073  T

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Target: scaffold0129 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 42493 - 42553
Alignment:
Q  171 tttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttgaccattagat 230  Q
    ||||||||||||||| ||| |||||| |||||||||||||||| | |||  ||||||||||    
T  42493 tttagcatgggaaaggctagtttttttccaccatgggaaagttgggtttaaaccattagat 42553  T

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