View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13431_low_5 (Length: 410)

Name: NF13431_low_5
Description: NF13431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13431_low_5
NF13431_low_5
[»] chr8 (19 HSPs)
chr8 (18-396)||(43134101-43134479)
chr8 (19-81)||(30640801-30640863)
chr8 (270-355)||(24125380-24125465)
chr8 (18-82)||(34642667-34642731)
chr8 (18-84)||(3714572-3714638)
chr8 (18-84)||(9244065-9244131)
chr8 (36-84)||(43584408-43584456)
chr8 (18-84)||(9245483-9245550)
chr8 (33-84)||(26364741-26364792)
chr8 (18-84)||(20308923-20308989)
chr8 (18-84)||(21095556-21095622)
chr8 (18-84)||(41636831-41636897)
chr8 (34-83)||(522165-522214)
chr8 (37-84)||(41638223-41638270)
chr8 (34-84)||(3713063-3713112)
chr8 (34-84)||(26366262-26366312)
chr8 (32-62)||(41638158-41638188)
chr8 (36-81)||(43586014-43586059)
chr8 (32-60)||(26366200-26366228)
[»] chr2 (17 HSPs)
chr2 (18-84)||(5033478-5033544)
chr2 (18-84)||(5034868-5034934)
chr2 (18-84)||(16602725-16602791)
chr2 (33-84)||(27891106-27891157)
chr2 (33-84)||(27892403-27892454)
chr2 (270-365)||(33612201-33612296)
chr2 (37-84)||(43814521-43814568)
chr2 (18-84)||(23832968-23833034)
chr2 (18-84)||(23833922-23833988)
chr2 (36-82)||(26388220-26388266)
chr2 (18-84)||(38244007-38244073)
chr2 (27-84)||(16604250-16604307)
chr2 (18-83)||(19577378-19577443)
chr2 (270-355)||(20142410-20142495)
chr2 (32-61)||(38243961-38243990)
chr2 (270-355)||(41867578-41867663)
chr2 (33-81)||(43814648-43814696)
[»] chr4 (32 HSPs)
chr4 (18-84)||(10804247-10804313)
chr4 (18-84)||(34122854-34122920)
chr4 (18-62)||(5433459-5433503)
chr4 (18-84)||(10802889-10802955)
chr4 (18-84)||(38031168-38031234)
chr4 (36-84)||(17356361-17356409)
chr4 (33-84)||(8815424-8815475)
chr4 (18-84)||(38032472-38032538)
chr4 (34-84)||(48080270-48080320)
chr4 (18-84)||(48463036-48463102)
chr4 (270-355)||(3330302-3330387)
chr4 (27-84)||(8814135-8814192)
chr4 (34-86)||(35191815-35191867)
chr4 (34-81)||(17357931-17357978)
chr4 (33-84)||(22621867-22621918)
chr4 (33-84)||(34121299-34121350)
chr4 (34-81)||(48081658-48081705)
chr4 (18-61)||(48499387-48499430)
chr4 (33-84)||(56233724-56233775)
chr4 (18-84)||(7261595-7261661)
chr4 (32-62)||(35193202-35193232)
chr4 (32-82)||(48081393-48081443)
chr4 (38-80)||(48501395-48501437)
chr4 (32-61)||(7261549-7261578)
chr4 (32-61)||(10802972-10803001)
chr4 (18-83)||(23758023-23758088)
chr4 (33-62)||(48501330-48501359)
chr4 (270-355)||(53170850-53170935)
chr4 (32-61)||(56233807-56233836)
chr4 (33-61)||(8814218-8814246)
chr4 (33-61)||(48081597-48081625)
chr4 (36-84)||(56235090-56235138)
[»] chr7 (45 HSPs)
chr7 (19-84)||(27071020-27071085)
chr7 (19-84)||(27207228-27207293)
chr7 (18-89)||(42611430-42611501)
chr7 (18-84)||(26006795-26006861)
chr7 (18-84)||(43113674-43113740)
chr7 (18-84)||(44231894-44231960)
chr7 (18-84)||(48792443-48792509)
chr7 (27-84)||(9391519-9391576)
chr7 (19-83)||(7057382-7057446)
chr7 (18-81)||(3537429-3537492)
chr7 (33-80)||(12630507-12630554)
chr7 (33-84)||(43960945-43960996)
chr7 (33-84)||(44420589-44420640)
chr7 (33-84)||(45688867-45688918)
chr7 (18-84)||(18788612-18788678)
chr7 (18-84)||(19217627-19217693)
chr7 (18-84)||(29186664-29186730)
chr7 (18-84)||(29188082-29188148)
chr7 (27-84)||(19008931-19008988)
chr7 (266-365)||(4501606-4501705)
chr7 (33-84)||(43962636-43962687)
chr7 (18-84)||(13597144-13597210)
chr7 (18-84)||(27072706-27072772)
chr7 (18-84)||(27205541-27205607)
chr7 (34-84)||(44417457-44417507)
chr7 (27-81)||(44746729-44746783)
chr7 (18-84)||(48793568-48793634)
chr7 (27-84)||(19016758-19016815)
chr7 (34-83)||(26005412-26005461)
chr7 (36-84)||(7011633-7011681)
chr7 (36-84)||(7026991-7027039)
chr7 (36-84)||(13750706-13750754)
chr7 (33-84)||(3538630-3538681)
chr7 (18-84)||(32519801-32519867)
chr7 (32-62)||(44230509-44230539)
chr7 (32-61)||(9392821-9392850)
chr7 (32-61)||(13750642-13750671)
chr7 (18-83)||(18787149-18787214)
chr7 (32-61)||(18787231-18787260)
chr7 (32-61)||(18788566-18788595)
chr7 (18-79)||(32518426-32518487)
chr7 (32-61)||(43113757-43113786)
chr7 (33-61)||(27072661-27072689)
chr7 (33-61)||(27205624-27205652)
chr7 (33-61)||(44746809-44746837)
[»] chr6 (20 HSPs)
chr6 (33-84)||(34995352-34995403)
chr6 (18-84)||(3000845-3000911)
chr6 (18-84)||(11801394-11801460)
chr6 (18-84)||(18572885-18572951)
chr6 (33-91)||(29477752-29477810)
chr6 (27-81)||(32712358-32712412)
chr6 (18-84)||(32349089-32349155)
chr6 (182-240)||(34304742-34304800)
chr6 (18-82)||(34996813-34996877)
chr6 (34-84)||(18574361-18574411)
chr6 (32-62)||(29479200-29479230)
chr6 (18-84)||(29479246-29479312)
chr6 (32-66)||(32712433-32712467)
chr6 (32-62)||(34995433-34995463)
chr6 (270-355)||(4206266-4206351)
chr6 (300-357)||(32120311-32120368)
chr6 (32-61)||(32713889-32713918)
chr6 (32-61)||(34996767-34996796)
chr6 (20-84)||(19761942-19762006)
chr6 (18-94)||(32347798-32347874)
[»] chr5 (22 HSPs)
chr5 (36-83)||(25001643-25001690)
chr5 (18-84)||(39349480-39349546)
chr5 (27-84)||(13276819-13276876)
chr5 (18-86)||(8447075-8447143)
chr5 (18-84)||(39350697-39350763)
chr5 (270-355)||(433644-433729)
chr5 (18-82)||(19228840-19228904)
chr5 (270-365)||(15291683-15291778)
chr5 (33-84)||(35952503-35952554)
chr5 (18-84)||(12373773-12373839)
chr5 (18-84)||(18654296-18654362)
chr5 (18-84)||(19230125-19230191)
chr5 (32-84)||(4031881-4031933)
chr5 (33-84)||(6803691-6803742)
chr5 (33-84)||(12372314-12372365)
chr5 (33-84)||(18655719-18655770)
chr5 (18-84)||(9083348-9083414)
chr5 (32-61)||(6803630-6803659)
chr5 (32-61)||(9082062-9082091)
chr5 (32-61)||(39164139-39164168)
chr5 (33-61)||(13276902-13276930)
chr5 (33-81)||(13278298-13278346)
[»] chr3 (49 HSPs)
chr3 (33-84)||(23091191-23091242)
chr3 (18-84)||(23073426-23073492)
chr3 (19-84)||(24376481-24376546)
chr3 (33-84)||(17117466-17117517)
chr3 (17-84)||(34014508-34014575)
chr3 (18-93)||(37609312-37609387)
chr3 (18-81)||(46902334-46902397)
chr3 (27-89)||(10979236-10979298)
chr3 (18-84)||(28777739-28777805)
chr3 (18-84)||(31937035-31937101)
chr3 (18-84)||(54353023-54353089)
chr3 (27-84)||(34015829-34015886)
chr3 (33-82)||(52525426-52525475)
chr3 (27-84)||(53101834-53101891)
chr3 (36-84)||(50881179-50881227)
chr3 (33-84)||(2233372-2233423)
chr3 (33-84)||(11348538-11348589)
chr3 (33-84)||(31938374-31938425)
chr3 (33-80)||(43392630-43392677)
chr3 (18-83)||(11346813-11346878)
chr3 (18-83)||(35759283-35759348)
chr3 (33-82)||(43394121-43394170)
chr3 (27-84)||(46903685-46903742)
chr3 (33-84)||(2232602-2232653)
chr3 (33-84)||(17116202-17116253)
chr3 (33-84)||(21727910-21727961)
chr3 (18-81)||(47431239-47431302)
chr3 (18-61)||(50879517-50879560)
chr3 (266-365)||(52411562-52411661)
chr3 (18-61)||(55209805-55209848)
chr3 (27-89)||(5689720-5689782)
chr3 (182-240)||(39583032-39583090)
chr3 (18-84)||(46986142-46986208)
chr3 (20-82)||(53101545-53101606)
chr3 (32-61)||(2233311-2233340)
chr3 (36-81)||(15290559-15290604)
chr3 (32-61)||(23072142-23072171)
chr3 (27-84)||(28776448-28776505)
chr3 (32-61)||(35758087-35758116)
chr3 (34-83)||(53766034-53766083)
chr3 (37-81)||(5691165-5691209)
chr3 (33-61)||(17742360-17742388)
chr3 (33-61)||(19043680-19043708)
chr3 (18-74)||(21729240-21729296)
chr3 (20-84)||(27750485-27750549)
chr3 (37-81)||(37610797-37610841)
chr3 (34-62)||(46903632-46903660)
chr3 (33-61)||(47429650-47429678)
chr3 (32-84)||(54354457-54354509)
[»] chr1 (22 HSPs)
chr1 (18-84)||(51693147-51693213)
chr1 (18-84)||(52086627-52086693)
chr1 (18-83)||(25181502-25181567)
chr1 (18-84)||(40187603-40187669)
chr1 (32-84)||(52761602-52761654)
chr1 (33-84)||(50483511-50483561)
chr1 (18-84)||(7110226-7110292)
chr1 (18-84)||(51468953-51469019)
chr1 (33-81)||(45229670-45229718)
chr1 (37-84)||(1823363-1823410)
chr1 (18-61)||(7111527-7111570)
chr1 (33-84)||(18820823-18820874)
chr1 (33-84)||(51468339-51468390)
chr1 (27-61)||(17244198-17244232)
chr1 (32-62)||(45228357-45228387)
chr1 (33-67)||(52087841-52087875)
chr1 (32-61)||(5488873-5488902)
chr1 (32-61)||(50485002-50485031)
chr1 (32-61)||(51468422-51468451)
chr1 (20-84)||(40723090-40723154)
chr1 (18-82)||(47533906-47533970)
chr1 (34-62)||(51693229-51693257)
[»] scaffold0026 (1 HSPs)
scaffold0026 (19-84)||(104301-104366)
[»] scaffold0141 (2 HSPs)
scaffold0141 (18-84)||(35337-35403)
scaffold0141 (33-86)||(31031-31084)
[»] scaffold0049 (2 HSPs)
scaffold0049 (18-84)||(79409-79475)
scaffold0049 (33-86)||(83728-83781)
[»] scaffold1425 (2 HSPs)
scaffold1425 (34-84)||(1669-1719)
scaffold1425 (18-84)||(134-200)
[»] scaffold0878 (3 HSPs)
scaffold0878 (18-84)||(3079-3145)
scaffold0878 (32-61)||(1852-1881)
scaffold0878 (32-61)||(3033-3062)
[»] scaffold0018 (1 HSPs)
scaffold0018 (33-84)||(25412-25463)


Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 43134101 - 43134479
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcccattttaaatgannnnnnnaactggagaaactc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||       || |||||||||||    
T  43134101 agttaaaagttataggaccaaattgaataaaagaaataagttaaaggaccgacatatcaattaagcccattttaaatgatttttttaattggagaaactc 43134200  T
Q  118 caatgaagttcgcaagttcgtgatttcttcctattcatcatggttacatcgaaacatatgtaggtaagtgttgatcttctatatattgggtcaatcataa 217  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43134201 caatgaagtttgcaagttcgtgatttcttcctattcatcatggttacatcgaaacatatgtaggtaagtgttgatcttctatatattgggtcaatcataa 43134300  T
Q  218 agtttacatgcgtctccttcttcctattatattaaaaatgttcatttttaataaagtcatgtttgtacttaaaattgggaaactccttataatgaattta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43134301 agtttacatgcgtctccttcttcctattatattaaaaatgttcatttttaacaaagtcatgtttgtacttaaaattgggaaactccttataatgaattta 43134400  T
Q  318 atgttccccaaaagttttcagacacgccttacgacaaataagacacacnnnnnnnaatttatgagaggatagttcattt 396  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||       ||||||||||||||||||||||||    
T  43134401 atgttccccaaaagttttcagacacgccttacgacaaacaagacacactttttttaatttatgagaggatagttcattt 43134479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 30640863 - 30640801
Alignment:
Q  19 gttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaa 81  Q
    ||||||| |||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  30640863 gttaaaacttatgggaccaaattgaataaaagaaataagttaaaggaccggcatatcaattaa 30640801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 24125380 - 24125465
Alignment:
Q  270 aaagtcatgtttgtacttaaaattgggaaactccttataatgaatttaatgttccccaaaagttttcagacacgccttacgacaaa 355  Q
    ||||||||||||||||||||| | ||||| ||||||| ||||||    ||| ||||||||||| | ||||||||||||||||||||    
T  24125380 aaagtcatgtttgtacttaaagtcgggaagctccttaaaatgaacggcatgctccccaaaagtatccagacacgccttacgacaaa 24125465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 34642731 - 34642667
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaag 82  Q
    |||||| | ||||| ||||||||||||||||||||||||||||| |||||| || ||||||||||    
T  34642731 agttaagacttatatgaccaaattgaataaaagaaataagttaagagaccggcagatcaattaag 34642667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 3714572 - 3714638
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||| |||| ||||||||||||||||||||||||||||||   |||| || ||||||||||||    
T  3714572 agttaaaacttatgggaccaaattgaataaaagaaataagttaaggaaccggcagatcaattaagcc 3714638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 9244131 - 9244065
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||| |||| ||||||||||||||||||||||||||||||  ||||  || ||||||||||||    
T  9244131 agttaaaacttatgggaccaaattgaataaaagaaataagttaagggaccagcagatcaattaagcc 9244065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 43584456 - 43584408
Alignment:
Q  36 caaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  43584456 caaattgaataaaagaaataagttaatggaccgacagatcaattaagcc 43584408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 9245483 - 9245550
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaa-gaccgacatatcaattaagcc 84  Q
    |||||| | |||| |||||||||||||||||||||||||||||||| ||||| || |||| |||||||    
T  9245483 agttaagacttatgggaccaaattgaataaaagaaataagttaaaaggaccggcagatcatttaagcc 9245550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 26364792 - 26364741
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  26364792 gaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 26364741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 20308989 - 20308923
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||| |||| ||||  ||||||||||||||||||||||||  ||||| || ||||||||||||    
T  20308989 agttaaaacttatgggactcaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 20308923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 21095622 - 21095556
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||| |||| ||||  ||||||||||||||||||||||||  ||||| || ||||||||||||    
T  21095622 agttaaaacttatgggactcaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 21095556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 41636897 - 41636831
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| |||||||||||||| |||||||||||| ||| ||||| || ||||||||||||    
T  41636897 agttaagacttatgggaccaaattgaatgaaagaaataagtaaaaggaccggcaaatcaattaagcc 41636831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 522165 - 522214
Alignment:
Q  34 accaaattgaataaaagaaataagttaaaagaccgacatatcaattaagc 83  Q
    ||||||||||||||||||||||||||||  |||||||| || ||||||||    
T  522165 accaaattgaataaaagaaataagttaagggaccgacagattaattaagc 522214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 41638223 - 41638270
Alignment:
Q  37 aaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||  ||||| || ||||||||||||    
T  41638223 aaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 41638270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 3713112 - 3713063
Alignment:
Q  34 accaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||| |||||||||||||| |||| ||||||||| ||||||||||||    
T  3713112 accaaattaaataaaagaaataa-ttaagagaccgacagatcaattaagcc 3713063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 26366262 - 26366312
Alignment:
Q  34 accaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||| |||||||||||||||||||| || || || ||||||||||||    
T  26366262 accaaattaaataaaagaaataagttaaaggatcggcagatcaattaagcc 26366312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 62
Target Start/End: Original strand, 41638158 - 41638188
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaaa 62  Q
    |||||||||||||||||||||||||||||||    
T  41638158 ggaccaaattgaataaaagaaataagttaaa 41638188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 43586014 - 43586059
Alignment:
Q  36 caaattgaataaaagaaataagttaaaagaccgacatatcaattaa 81  Q
    |||||| |||||||||||||||||||  |||||||| |||||||||    
T  43586014 caaattaaataaaagaaataagttaagggaccgacagatcaattaa 43586059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 26366200 - 26366228
Alignment:
Q  32 ggaccaaattgaataaaagaaataagtta 60  Q
    |||||||||||||||||||||||||||||    
T  26366200 ggaccaaattgaataaaagaaataagtta 26366228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 5033544 - 5033478
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||||    
T  5033544 agttaaaagttataggaccaaattgaataaaagaaataagttaaaggactgacagatctattaagcc 5033478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 5034868 - 5034934
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||||||||||| |||||||| |||||||||||||||||||| ||||| || ||||||||||||    
T  5034868 agttaaaagttatagaaccaaattaaataaaagaaataagttaaaggaccggcaaatcaattaagcc 5034934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 16602791 - 16602725
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||||||||||||||||||| ||||  |||||||| ||||||||||||    
T  16602791 agttaagacttatgggaccaaattgaataaaagaaataaattaagggaccgacagatcaattaagcc 16602725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 27891157 - 27891106
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  27891157 gaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 27891106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 27892403 - 27892454
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  27892403 gaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 27892454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 365
Target Start/End: Complemental strand, 33612296 - 33612201
Alignment:
Q  270 aaagtcatgtttgtacttaaaattgggaaactccttataatgaatttaatgttccccaaaagttttcagacacgccttacgacaaataagacacac 365  Q
    |||||||||| ||||||||||||  |||| ||||||| ||||| ||  ||| ||||||||||| | ||||||| | |||||||||| | |||||||    
T  33612296 aaagtcatgtatgtacttaaaatctggaagctccttacaatgagttgtatgctccccaaaagtatccagacacactttacgacaaacatgacacac 33612201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 43814568 - 43814521
Alignment:
Q  37 aaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||    
T  43814568 aaattgaataaaagaaataagttaagggaccgacaaatcaattaagcc 43814521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 23833034 - 23832968
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||| |||||||| |||||||||||  |||||||| ||||||||||||    
T  23833034 agttaagacttatgggaccaaatggaataaaataaataagttaagggaccgacaaatcaattaagcc 23832968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 23833922 - 23833988
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||| ||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  23833922 agttaagacttatgggatcaaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 23833988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 26388266 - 26388220
Alignment:
Q  36 caaattgaataaaagaaataagttaaaagaccgacatatcaattaag 82  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  26388266 caaattgaataaaaaaaataagttaagagaccgacagatcaattaag 26388220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 38244007 - 38244073
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| |||||||| |||||||||||||||| ||||  |||||||| ||||||||||||    
T  38244007 agttaagacttatgggaccaaaatgaataaaagaaataaattaagggaccgacagatcaattaagcc 38244073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 16604250 - 16604307
Alignment:
Q  27 ttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||| ||||||||||||||||||||||||||||||  |||||  | ||||||||||||    
T  16604250 ttatgggaccaaattgaataaaagaaataagttaagggaccggtagatcaattaagcc 16604307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 19577378 - 19577443
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagc 83  Q
    |||||| |||||| |||||||||||| |||||||||||||||||  |||||  | |||||||||||    
T  19577378 agttaagagttatgggaccaaattgactaaaagaaataagttaagggaccgggagatcaattaagc 19577443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 20142495 - 20142410
Alignment:
Q  270 aaagtcatgtttgtacttaaaattgggaaactccttataatgaatttaatgttccccaaaagttttcagacacgccttacgacaaa 355  Q
    |||||||||| ||||||||||    |||| ||||||| ||||||    ||| ||||||||||| | ||||||||||||||||||||    
T  20142495 aaagtcatgtctgtacttaaagcctggaagctccttacaatgaacgacatgctccccaaaagtatccagacacgccttacgacaaa 20142410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 38243961 - 38243990
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  38243961 ggaccaaattgaataaaagaaataagttaa 38243990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 41867663 - 41867578
Alignment:
Q  270 aaagtcatgtttgtacttaaaattgggaaactccttataatgaatttaatgttccccaaaagttttcagacacgccttacgacaaa 355  Q
    ||||||| || ||||||||||   ||||| ||||||| |||||||   ||| ||||||||||| | |||||||| |||||||||||    
T  41867663 aaagtcacgtctgtacttaaagccgggaagctccttacaatgaatggcatgctccccaaaagtatccagacacgacttacgacaaa 41867578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 43814648 - 43814696
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaa 81  Q
    ||||||||||||||||||||||| ||||   |||||||| |||||||||    
T  43814648 gaccaaattgaataaaagaaatatgttaggggaccgacagatcaattaa 43814696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 10804247 - 10804313
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||| |||||||||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  10804247 agttaaaacttataggaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 10804313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 34122854 - 34122920
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  34122854 agttaagatttatgggaccaaattgaataaaagaaataagttaagggaccgacagatcaattaagcc 34122920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 5433459 - 5433503
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaa 62  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  5433459 agttaaaacttataggaccaaattgaataaaagaaataagttaaa 5433503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 10802955 - 10802889
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||| |||| ||||||||||||||||||||||||||||||  || || || ||||||||||||    
T  10802955 agttaaaatttatgggaccaaattgaataaaagaaataagttaagggatcggcagatcaattaagcc 10802889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 38031234 - 38031168
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||||||||||||||||||||||||||||| ||||  ||||| || ||||||||||||    
T  38031234 agttaagacttataggaccaaattgaataaaagaaataaattaagggaccggcagatcaattaagcc 38031168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 17356409 - 17356361
Alignment:
Q  36 caaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  17356409 caaattgaataaaagaaataagttaagggaccgacagatcaattaagcc 17356361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 8815424 - 8815475
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  8815424 gaccaaattgaataaaagaaataagttaacggaccggcaaatcaattaagcc 8815475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 38032472 - 38032538
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | ||||| |||||||||||||||||||||||| ||||  ||||| || ||||||||||||    
T  38032472 agttaagacttatatgaccaaattgaataaaagaaataaattaagggaccggcagatcaattaagcc 38032538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 48080320 - 48080270
Alignment:
Q  34 accaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||| |||||||||||||||||||  |||||||| ||||||||||||    
T  48080320 accaaattaaataaaagaaataagttaagtgaccgacagatcaattaagcc 48080270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 48463036 - 48463102
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||| ||||  |||||||||||||||||||||||||||||  ||||  || ||||||||||||    
T  48463036 agttaaaacttatgagaccaaattgaataaaagaaataagttaagggaccagcagatcaattaagcc 48463102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 3330302 - 3330387
Alignment:
Q  270 aaagtcatgtttgtacttaaaattgggaaactccttataatgaatttaatgttccccaaaagttttcagacacgccttacgacaaa 355  Q
    |||||||||  ||||||||||   ||||| ||||||| |||||||   ||| ||||||||||| | ||||||||||||||||||||    
T  3330302 aaagtcatgcctgtacttaaagccgggaagctccttacaatgaatggcatgctccccaaaagtatacagacacgccttacgacaaa 3330387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 8814192 - 8814135
Alignment:
Q  27 ttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||| |||| |||||||||||||||||||||||||  |||||| | ||||||||||||    
T  8814192 ttatgggactaaattgaataaaagaaataagttaagggaccgatagatcaattaagcc 8814135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 35191867 - 35191815
Alignment:
Q  34 accaaattgaataaaagaaataagttaaaagaccgacatatcaattaagccca 86  Q
    ||||||||||||||||||||||||||||  ||||| |  ||||||||||||||    
T  35191867 accaaattgaataaaagaaataagttaagggaccggcgaatcaattaagccca 35191815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 17357931 - 17357978
Alignment:
Q  34 accaaattgaataaaagaaataagttaaaagaccgacatatcaattaa 81  Q
    ||||||||||||||||||||||||||||  ||||| || |||||||||    
T  17357931 accaaattgaataaaagaaataagttaagggaccggcagatcaattaa 17357978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 22621918 - 22621867
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||  ||| | || ||||||||||||    
T  22621918 gaccaaattgaataaaagaaataagttaagggactggcagatcaattaagcc 22621867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 34121350 - 34121299
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||| ||||  ||||| || ||||||||||||    
T  34121350 gaccaaattgaataaaagaaataaattaagggaccggcagatcaattaagcc 34121299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 48081658 - 48081705
Alignment:
Q  34 accaaattgaataaaagaaataagttaaaagaccgacatatcaattaa 81  Q
    ||||||||||||||||| ||||||||||  |||||||| |||||||||    
T  48081658 accaaattgaataaaaggaataagttaagggaccgacacatcaattaa 48081705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 48499430 - 48499387
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaa 61  Q
    |||||| | |||| ||||||||||||||||||||||||||||||    
T  48499430 agttaagaattatgggaccaaattgaataaaagaaataagttaa 48499387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 56233775 - 56233724
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||  |||||| | ||| ||||||||    
T  56233775 gaccaaattgaataaaagaaataagttaagggaccgatagatctattaagcc 56233724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 7261595 - 7261661
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||| ||||||||||||||||||||||||||  |||||  | ||||||||||||    
T  7261595 agttaagacttatgggatcaaattgaataaaagaaataagttaagggaccggtagatcaattaagcc 7261661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 62
Target Start/End: Original strand, 35193202 - 35193232
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaaa 62  Q
    |||||||||||||||||||||||||||||||    
T  35193202 ggaccaaattgaataaaagaaataagttaaa 35193232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 48081393 - 48081443
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaag 82  Q
    ||||||||||||||||||| ||||||||||  ||||| || ||||||||||    
T  48081393 ggaccaaattgaataaaaggaataagttaagggaccggcaaatcaattaag 48081443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 48501395 - 48501437
Alignment:
Q  38 aattgaataaaagaaataagttaaaagaccgacatatcaatta 80  Q
    |||||||||||||||||||||||||  ||||||| ||||||||    
T  48501395 aattgaataaaagaaataagttaaagaaccgacagatcaatta 48501437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 7261549 - 7261578
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  7261549 ggaccaaattgaataaaagaaataagttaa 7261578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 10803001 - 10802972
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  10803001 ggaccaaattgaataaaagaaataagttaa 10802972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 23758023 - 23758088
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagc 83  Q
    |||||||| ||||  ||| |||||||||||||||||||| |||||  |||| || |||||||||||    
T  23758023 agttaaaacttatgagactaaattgaataaaagaaataaattaaagaaccggcagatcaattaagc 23758088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 62
Target Start/End: Original strand, 48501330 - 48501359
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaa 62  Q
    ||||||||||||||||||||||||||||||    
T  48501330 gaccaaattgaataaaagaaataagttaaa 48501359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 53170850 - 53170935
Alignment:
Q  270 aaagtcatgtttgtacttaaaattgggaaactccttataatgaatttaatgttccccaaaagttttcagacacgccttacgacaaa 355  Q
    |||||||||| |||||||| |   ||||| ||||||| ||||||    ||| ||||||||||| ||||| ||||||||||||||||    
T  53170850 aaagtcatgtctgtacttagagcggggaagctccttacaatgaacgacatgctccccaaaagtattcaggcacgccttacgacaaa 53170935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 56233836 - 56233807
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  56233836 ggaccaaattgaataaaagaaataagttaa 56233807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 8814246 - 8814218
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaa 61  Q
    |||||||||||||||||||||||||||||    
T  8814246 gaccaaattgaataaaagaaataagttaa 8814218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 48081597 - 48081625
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaa 61  Q
    |||||||||||||||||||||||||||||    
T  48081597 gaccaaattgaataaaagaaataagttaa 48081625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 56235090 - 56235138
Alignment:
Q  36 caaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||||||||||||||||| ||||  ||| |||| ||||||||||||    
T  56235090 caaattgaataaaagaaataaattaagggactgacagatcaattaagcc 56235138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 45)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 27071085 - 27071020
Alignment:
Q  19 gttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||| |||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||||    
T  27071085 gttaaaacttatgggaccaaattgaataaaagaaataagttaaatgaccggcagatcaattaagcc 27071020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 27207228 - 27207293
Alignment:
Q  19 gttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||| |||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||||    
T  27207228 gttaaaacttatgggaccaaattgaataaaagaaataagttaaatgaccggcagatcaattaagcc 27207293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 42611501 - 42611430
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcccattt 89  Q
    |||||||| |||| | ||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||    
T  42611501 agttaaaacttatggaaccaaattgaataaaagaaataagttaaaggaccggcagatcaattaagcctattt 42611430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 26006795 - 26006861
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||| |||| ||||||||||||| ||||||||||||||||  |||||||| ||||||||||||    
T  26006795 agttaaaacttatgggaccaaattgaacaaaagaaataagttaagggaccgacagatcaattaagcc 26006861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 43113740 - 43113674
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||| ||||  |||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  43113740 agttaaaacttatgagaccaaattgaataaaagaaataagttaagggaccgacagatcaattaagcc 43113674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 44231894 - 44231960
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  44231894 agttaagatttatgggaccaaattgaataaaagaaataagttaagggaccgacagatcaattaagcc 44231960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 48792509 - 48792443
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||| |||| ||||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  48792509 agttaaaacttatgggaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 48792443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 9391576 - 9391519
Alignment:
Q  27 ttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  9391576 ttataggaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 9391519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 7057382 - 7057446
Alignment:
Q  19 gttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagc 83  Q
    ||||||| |||| ||||||||||||||||||||||||||||||  ||||| || |||||||||||    
T  7057382 gttaaaacttatgggaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagc 7057446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 3537492 - 3537429
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaa 81  Q
    |||||||| |||| ||||||||||||||||||||||||||||||  ||||| || |||||||||    
T  3537492 agttaaaacttatgggaccaaattgaataaaagaaataagttaagggaccggcagatcaattaa 3537429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 12630554 - 12630507
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaatta 80  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  12630554 gaccaaattgaataaaagacataagttaaaggaccgacatatcaatta 12630507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 43960996 - 43960945
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  43960996 gaccaaattgaataaaagaaataagttaagggaccgacagatcaattaagcc 43960945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 44420589 - 44420640
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||| || || |||||||||||||||    
T  44420589 gaccaaattgaataaaagaaataagttaaaggatcggcatatcaattaagcc 44420640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 45688918 - 45688867
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  45688918 gaccaaattgaataaaagaaataagttaagggaccgacagatcaattaagcc 45688867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 18788612 - 18788678
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | ||||||||||| |||||||||||||||||| ||||  ||||| |||||||||||||||    
T  18788612 agttaagatttataggaccatattgaataaaagaaataaattaagggaccggcatatcaattaagcc 18788678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 19217693 - 19217627
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  19217693 agttaagacttatgggaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 19217627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 29186730 - 29186664
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||| |||| ||||||||||||||||||||||||||||||  ||||  || ||||||||||||    
T  29186730 agttaaaacttatgggaccaaattgaataaaagaaataagttaagggaccagcagatcaattaagcc 29186664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 29188082 - 29188148
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||||||||||||||||||||||||| ||||| || |||| |||||||    
T  29188082 agttaagacttatgggaccaaattgaataaaagaaataagttaaaggaccggcagatcatttaagcc 29188148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 19008988 - 19008931
Alignment:
Q  27 ttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||| ||||||||||||| ||||||||||||||||  |||||||| ||||||||||||    
T  19008988 ttatgggaccaaattgaaaaaaagaaataagttaagggaccgacagatcaattaagcc 19008931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 365
Target Start/End: Original strand, 4501606 - 4501705
Alignment:
Q  266 taataaagtcatgtttgtacttaaaattgggaaactccttataatgaatttaatgttccccaaaagttttcagacacgccttacgacaaataagacacac 365  Q
    |||||||||| ||| |||||||||| | ||||| ||||||| ||||||    ||| ||||||||||| | ||| |||||||||||||||| | |||||||    
T  4501606 taataaagtcgtgtgtgtacttaaagtcgggaagctccttacaatgaacgacatggtccccaaaagtatccaggcacgccttacgacaaacatgacacac 4501705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 43962636 - 43962687
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  43962636 gaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 43962687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 13597210 - 13597144
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | ||||||||||||||||||||||||||||| |||||| || || ||  |||||||||||    
T  13597210 agttaagacttataggaccaaattgaataaaagaaatacgttaaaggatcggcagttcaattaagcc 13597144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 27072706 - 27072772
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||| ||||||||||||||||||||| ||||  |||||||| ||||||||||||    
T  27072706 agttaagacttatgggatcaaattgaataaaagaaataaattaagggaccgacagatcaattaagcc 27072772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 27205607 - 27205541
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||| ||||||||||||||||||||| ||||  |||||||| ||||||||||||    
T  27205607 agttaagacttatgggatcaaattgaataaaagaaataaattaagggaccgacagatcaattaagcc 27205541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 44417507 - 44417457
Alignment:
Q  34 accaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  44417507 accaaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 44417457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 44746783 - 44746729
Alignment:
Q  27 ttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaa 81  Q
    ||||| || |||||||||||||| ||||||||||| ||||||||| |||||||||    
T  44746783 ttataagatcaaattgaataaaaaaaataagttaagagaccgacagatcaattaa 44746729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 48793568 - 48793634
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| |||||||| |||||||||||||||||||||  ||||| || ||||||||||||    
T  48793568 agttaagacttatgggaccaaaatgaataaaagaaataagttaagggaccggcaaatcaattaagcc 48793634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 19016758 - 19016815
Alignment:
Q  27 ttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||| ||||||||||||| ||||||||||| ||||  |||||||| ||||||||||||    
T  19016758 ttatgggaccaaattgaaaaaaagaaataaattaagggaccgacagatcaattaagcc 19016815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 26005461 - 26005412
Alignment:
Q  34 accaaattgaataaaagaaataagttaaaagaccgacatatcaattaagc 83  Q
    ||||||||||||||||||||||||||||  ||||| || |||||||||||    
T  26005461 accaaattgaataaaagaaataagttaagggaccggcagatcaattaagc 26005412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 7011681 - 7011633
Alignment:
Q  36 caaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||||||||||||||||||||||  ||| |||| ||||||||||||    
T  7011681 caaattgaataaaagaaataagttaagggactgacagatcaattaagcc 7011633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 7027039 - 7026991
Alignment:
Q  36 caaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||||||||||||||||||||||  ||| |||| ||||||||||||    
T  7027039 caaattgaataaaagaaataagttaagggactgacagatcaattaagcc 7026991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 13750706 - 13750754
Alignment:
Q  36 caaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  13750706 caaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 13750754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 3538630 - 3538681
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||  ||||| |  ||||||||||||    
T  3538630 gaccaaattgaataaaagaaataagttaagggaccggcggatcaattaagcc 3538681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 32519801 - 32519867
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||||||||||||||||||| ||||  ||||| || ||||||| ||||    
T  32519801 agttaagatttatgggaccaaattgaataaaagaaataaattaagggaccggcagatcaatttagcc 32519867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 62
Target Start/End: Complemental strand, 44230539 - 44230509
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaaa 62  Q
    |||||||||||||||||||||||||||||||    
T  44230539 ggaccaaattgaataaaagaaataagttaaa 44230509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 9392821 - 9392850
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  9392821 ggaccaaattgaataaaagaaataagttaa 9392850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 13750642 - 13750671
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  13750642 ggaccaaattgaataaaagaaataagttaa 13750671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 18787214 - 18787149
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagc 83  Q
    |||||| | |||| |||||||||| || ||||||||||| ||||  |||||||| |||||||||||    
T  18787214 agttaagatttatgggaccaaattaaacaaaagaaataaattaagggaccgacagatcaattaagc 18787149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 18787260 - 18787231
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  18787260 ggaccaaattgaataaaagaaataagttaa 18787231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 18788566 - 18788595
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  18788566 ggaccaaattgaataaaagaaataagttaa 18788595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 32518487 - 32518426
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaatt 79  Q
    |||||| | |||| ||||||||||||||||||||||||| ||||  |||||| | |||||||    
T  32518487 agttaagatttatgggaccaaattgaataaaagaaataaattaagggaccgatagatcaatt 32518426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 43113786 - 43113757
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  43113786 ggaccaaattgaataaaagaaataagttaa 43113757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 27072661 - 27072689
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaa 61  Q
    |||||||||||||||||||||||||||||    
T  27072661 gaccaaattgaataaaagaaataagttaa 27072689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 27205652 - 27205624
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaa 61  Q
    |||||||||||||||||||||||||||||    
T  27205652 gaccaaattgaataaaagaaataagttaa 27205624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 44746837 - 44746809
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaa 61  Q
    |||||||||||||||||||||||||||||    
T  44746837 gaccaaattgaataaaagaaataagttaa 44746809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 34995403 - 34995352
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  34995403 gaccaaattgaataaaagaaataagttaaaggaccgacagatcaattaagcc 34995352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 3000845 - 3000911
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  3000845 agttaagatttatgggaccaaattgaataaaagaaataagttaagggaccgacaaatcaattaagcc 3000911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 11801394 - 11801460
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||||||||||||||||||||||||||||| ||||  ||||| || ||||||||||||    
T  11801394 agttaagacttataggaccaaattgaataaaagaaataaattaagggaccggcagatcaattaagcc 11801460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 18572951 - 18572885
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  18572951 agttaagacttatgggaccaaattgaataaaagaaataagttaacggaccggcagatcaattaagcc 18572885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 29477810 - 29477752
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcccatttta 91  Q
    |||||||||||||||||||||||||||||  ||||| || |||||||||||| ||||||    
T  29477810 gaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagccaatttta 29477752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 32712412 - 32712358
Alignment:
Q  27 ttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaa 81  Q
    ||||||||||||| |||||||||||||||||||||  |||||||| |||||||||    
T  32712412 ttataggaccaaactgaataaaagaaataagttaagggaccgacagatcaattaa 32712358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 32349089 - 32349155
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | ||||| |||||||||||||||||||||||| ||||  ||||| || ||||||||||||    
T  32349089 agttaagacttataagaccaaattgaataaaagaaataaattaagggaccggcagatcaattaagcc 32349155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 34304742 - 34304800
Alignment:
Q  182 taagtgttgatcttctatatattgggtcaatcataaagtttacatgcgtctccttcttc 240  Q
    ||||||| |||||||||| || ||||||| ||| |||||| ||||||||||||||||||    
T  34304742 taagtgtcgatcttctatctagtgggtcagtcagaaagttcacatgcgtctccttcttc 34304800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 34996813 - 34996877
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaag 82  Q
    |||||| | |||| |||| ||||||||||||||||||||||| |  |||||||| ||||||||||    
T  34996813 agttaagacttatgggactaaattgaataaaagaaataagttcagggaccgacaaatcaattaag 34996877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 18574361 - 18574411
Alignment:
Q  34 accaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||||||||||||||||||||| ||  ||||| || ||||||||||||    
T  18574361 accaaattgaataaaagaaataagtcaagggaccggcagatcaattaagcc 18574411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 62
Target Start/End: Original strand, 29479200 - 29479230
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaaa 62  Q
    |||||||||||||||||||||||||||||||    
T  29479200 ggaccaaattgaataaaagaaataagttaaa 29479230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 29479246 - 29479312
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||| |||| |||||| |||||||||||||||||| ||||  || || || ||||||||||||    
T  29479246 agttaaaacttatgggaccagattgaataaaagaaataatttaagggatcggcagatcaattaagcc 29479312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 32712467 - 32712433
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaaaagac 66  Q
    |||||||||||||||||||||||||||||| ||||    
T  32712467 ggaccaaattgaataaaagaaataagttaagagac 32712433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 62
Target Start/End: Complemental strand, 34995463 - 34995433
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaaa 62  Q
    |||||||||||||||||||||||||||||||    
T  34995463 ggaccaaattgaataaaagaaataagttaaa 34995433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 4206351 - 4206266
Alignment:
Q  270 aaagtcatgtttgtacttaaaattgggaaactccttataatgaatttaatgttccccaaaagttttcagacacgccttacgacaaa 355  Q
    |||||||||| ||||||||||  | |||||||||||| | ||||    ||| ||||||||||| | ||| ||||||||||||||||    
T  4206351 aaagtcatgtatgtacttaaagctcggaaactccttacagtgaacggcatgctccccaaaagtatccaggcacgccttacgacaaa 4206266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 32120311 - 32120368
Alignment:
Q  300 ctccttataatgaatttaatgttccccaaaagttttcagacacgccttacgacaaata 357  Q
    ||||||||||||||   |||| ||||||||||| | ||||||| ||||||||||||||    
T  32120311 ctccttataatgaaaggaatgctccccaaaagtatccagacacaccttacgacaaata 32120368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 32713889 - 32713918
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  32713889 ggaccaaattgaataaaagaaataagttaa 32713918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 34996767 - 34996796
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  34996767 ggaccaaattgaataaaagaaataagttaa 34996796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 19762006 - 19761942
Alignment:
Q  20 ttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| ||||| || |||||||||||||||||| |||||||  || ||||| || |||||||||    
T  19762006 ttaaaacttataagatcaaattgaataaaagaaacaagttaagggatcgacagatgaattaagcc 19761942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 32347874 - 32347798
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcccattttaaat 94  Q
    |||||| | ||||| |||||||||||||||||||||||| ||||   |||  || |||||||||||| | |||||||    
T  32347874 agttaagacttatatgaccaaattgaataaaagaaataaattaaggaaccagcagatcaattaagcctagtttaaat 32347798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 25001690 - 25001643
Alignment:
Q  36 caaattgaataaaagaaataagttaaaagaccgacatatcaattaagc 83  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25001690 caaattgaataaaagaaataagttaaaggaccgacatatcaattaagc 25001643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 39349546 - 39349480
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| |||||| | ||||||||||||||||||||||||||||| ||||| || ||||||||||||    
T  39349546 agttaagagttatggaaccaaattgaataaaagaaataagttaaaggaccgtcagatcaattaagcc 39349480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 13276876 - 13276819
Alignment:
Q  27 ttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  13276876 ttataggaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 13276819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 8447143 - 8447075
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagccca 86  Q
    |||||||| |||| ||||||||||||||||||||||||||||||  |||||  | ||||||||||||||    
T  8447143 agttaaaacttatgggaccaaattgaataaaagaaataagttaagggaccggtagatcaattaagccca 8447075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 39350697 - 39350763
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| |||| |||||||||||||||||||||||||  ||||| |||||||||||||||    
T  39350697 agttaagacttatgggactaaattgaataaaagaaataagttaagggaccggcatatcaattaagcc 39350763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 433644 - 433729
Alignment:
Q  270 aaagtcatgtttgtacttaaaattgggaaactccttataatgaatttaatgttccccaaaagttttcagacacgccttacgacaaa 355  Q
    |||||||||  |||||||||| ||||||| ||||||| ||||||    ||| ||||||||||| | ||||||||||||||||||||    
T  433644 aaagtcatgcctgtacttaaagttgggaagctccttacaatgaacgacatgctccccaaaagtatccagacacgccttacgacaaa 433729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 19228904 - 19228840
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaag 82  Q
    |||||| | |||||||||||||||||||||||||||||| ||||  ||||| || ||||||||||    
T  19228904 agttaagacttataggaccaaattgaataaaagaaataaattaagggaccggcagatcaattaag 19228840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 365
Target Start/End: Complemental strand, 15291778 - 15291683
Alignment:
Q  270 aaagtcatgtttgtacttaaaattgggaaactccttataatgaatttaatgttccccaaaagttttcagacacgccttacgacaaataagacacac 365  Q
    |||||||||||||||||||||   ||||| ||||||| ||||||    ||| ||||||||||| | |||||||||||||||| ||| | |||||||    
T  15291778 aaagtcatgtttgtacttaaagccgggaagctccttacaatgaacaacatgctccccaaaagtatccagacacgccttacgataaacatgacacac 15291683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 35952503 - 35952554
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||| ||| |||| |||| |||||||    
T  35952503 gaccaaattgaataaaagaaataagttaaaggactgacagatcagttaagcc 35952554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 12373773 - 12373839
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| |||| |||||||||||||||||||||||||| ||||| |  ||||||||||||    
T  12373773 agttaagacttatgggactaaattgaataaaagaaataagttaaaggaccggcggatcaattaagcc 12373839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 18654362 - 18654296
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||||||||||||||||||| ||||  ||||| || ||||||||||||    
T  18654362 agttaagacttatgggaccaaattgaataaaagaaataaattaagggaccggcagatcaattaagcc 18654296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 19230125 - 19230191
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||||||||||||||||||||||||||||| ||||  || || || ||||||||||||    
T  19230125 agttaagacttataggaccaaattgaataaaagaaataaattaagggatcggcagatcaattaagcc 19230191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 4031933 - 4031881
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||| |||||||||||||||||||||||||  ||||| || ||||||||||||    
T  4031933 ggactaaattgaataaaagaaataagttaagtgaccggcagatcaattaagcc 4031881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 6803691 - 6803742
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||||| |||||||||||||| ||||  |||||||| ||||||||||||    
T  6803691 gaccaaattaaataaaagaaataaattaagggaccgacagatcaattaagcc 6803742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 12372365 - 12372314
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||||||||||||| |||||||||||  ||||| || ||||||||||||    
T  12372365 gaccaaattgaataaaacaaataagttaagggaccggcagatcaattaagcc 12372314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 18655719 - 18655770
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||   |||| || ||||||||||||    
T  18655719 gaccaaattgaataaaagaaataagttaaggaaccggcagatcaattaagcc 18655770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 9083348 - 9083414
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||||||||||||||||| | |||| | |||| || ||||||||||||    
T  9083348 agttaagacttatgggaccaaattgaataaaagaaatgaattaagaaaccggcagatcaattaagcc 9083414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 6803630 - 6803659
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  6803630 ggaccaaattgaataaaagaaataagttaa 6803659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 9082091 - 9082062
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  9082091 ggaccaaattgaataaaagaaataagttaa 9082062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 39164168 - 39164139
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  39164168 ggaccaaattgaataaaagaaataagttaa 39164139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 13276930 - 13276902
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaa 61  Q
    |||||||||||||||||||||||||||||    
T  13276930 gaccaaattgaataaaagaaataagttaa 13276902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 13278298 - 13278346
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaa 81  Q
    ||||||||||||||||| |||||| ||||  |||||||| |||||||||    
T  13278298 gaccaaattgaataaaaaaaataaattaagggaccgacagatcaattaa 13278346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 23091242 - 23091191
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  23091242 gaccaaattgaataaaagaaataagttaaaagaccggcagatcaattaagcc 23091191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 23073426 - 23073492
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||||    
T  23073426 agttaagatttatgggaccaaattgaataaaagaaataagttaaaggaccggcagatcaattaagcc 23073492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 24376481 - 24376546
Alignment:
Q  19 gttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||| ||||  |||||||||||||||||||||||||||||| ||||| || ||||||||||||    
T  24376481 gttaaaacttatgagaccaaattgaataaaagaaataagttaaaggaccggcagatcaattaagcc 24376546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 17117466 - 17117517
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  17117466 gaccaaattgaataaaagaaataagttaagggaccgacagatcaattaagcc 17117517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 34014575 - 34014508
Alignment:
Q  17 cagttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||| | |||| ||||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  34014575 cagttaagatttatgggaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 34014508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 37609387 - 37609312
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcccattttaaa 93  Q
    |||||| | ||||| ||||||||| |||||||||||||||||||| ||||| || |||||||||||  ||||||||    
T  37609387 agttaagacttatatgaccaaattaaataaaagaaataagttaaaggaccggcagatcaattaagctaattttaaa 37609312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 46902397 - 46902334
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaa 81  Q
    |||||| | |||| ||||||||||||||||||||||||||||||  |||||||| |||||||||    
T  46902397 agttaagatttatgggaccaaattgaataaaagaaataagttaagggaccgacagatcaattaa 46902334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 10979236 - 10979298
Alignment:
Q  27 ttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcccattt 89  Q
    |||| ||||||||||||||||||||||||||||||  ||||| || |||||||||||| ||||    
T  10979236 ttatgggaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagccgattt 10979298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 28777739 - 28777805
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||||||||||||||||||||||||||||| ||||  ||||| || ||||||||||||    
T  28777739 agttaagacttataggaccaaattgaataaaagaaataaattaagggaccggcagatcaattaagcc 28777805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 31937101 - 31937035
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  31937101 agttaagacttatgggaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 31937035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 54353089 - 54353023
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||| ||||||||||||||||||||||||||| ||||| || ||||||||||||    
T  54353089 agttaagacttatgggatcaaattgaataaaagaaataagttaaaggaccgtcagatcaattaagcc 54353023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 34015829 - 34015886
Alignment:
Q  27 ttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||| ||||||||||||||||||||||||| ||||  |||||||| ||||||||||||    
T  34015829 ttatgggaccaaattgaataaaagaaataacttaagggaccgacaaatcaattaagcc 34015886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 52525426 - 52525475
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaag 82  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||    
T  52525426 gaccaaattgaataaaagaaataagttaagggaccgacaaatcaattaag 52525475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 53101834 - 53101891
Alignment:
Q  27 ttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||| ||||  ||||| || ||||||||||||    
T  53101834 ttataggaccaaattgaataaaagaaataacttaagggaccggcagatcaattaagcc 53101891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 50881179 - 50881227
Alignment:
Q  36 caaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  50881179 caaattgaataaaagaaataagttaagggaccgacacatcaattaagcc 50881227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 2233372 - 2233423
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||| ||||||||||||||||||||||||  |||||||| ||||||||||||    
T  2233372 gaccgaattgaataaaagaaataagttaagggaccgacagatcaattaagcc 2233423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 11348538 - 11348589
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  11348538 gaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 11348589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 31938374 - 31938425
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  31938374 gaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 31938425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 43392677 - 43392630
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaatta 80  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||    
T  43392677 gaccaaattgaataaaagaaataagttaagggaccgacagatcaatta 43392630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 11346878 - 11346813
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagc 83  Q
    |||||| | ||||| ||||||||| |||||||||||||| ||||  |||||||| |||||||||||    
T  11346878 agttaagatttatatgaccaaattaaataaaagaaataaattaagggaccgacagatcaattaagc 11346813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 35759283 - 35759348
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagc 83  Q
    |||||| | |||| |||| |||||||||||||||||||||||||  ||||| || |||||||||||    
T  35759283 agttaagacttatgggactaaattgaataaaagaaataagttaagggaccggcagatcaattaagc 35759348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 43394121 - 43394170
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaag 82  Q
    |||||||||||||||||||||||||||||  ||||| || ||||||||||    
T  43394121 gaccaaattgaataaaagaaataagttaagggaccggcagatcaattaag 43394170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 46903685 - 46903742
Alignment:
Q  27 ttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||| ||||||||||||||||||||||||||||||  ||| || | ||||||||||||    
T  46903685 ttatgggaccaaattgaataaaagaaataagttaagggactgaaagatcaattaagcc 46903742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 2232653 - 2232602
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||  || || || ||||||||||||    
T  2232653 gaccaaattgaataaaagaaataagttaagggatcggcagatcaattaagcc 2232602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 17116253 - 17116202
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||  || || || ||||||||||||    
T  17116253 gaccaaattgaataaaagaaataagttaagggatcggcagatcaattaagcc 17116202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 21727961 - 21727910
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||||||||||||||||||||||||   ||||| || ||||||||||||    
T  21727961 gaccaaattgaataaaagaaataagttatgggaccggcagatcaattaagcc 21727910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 47431239 - 47431302
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaa 81  Q
    |||||||| ||||  |||||||||||||||||||||||| ||||  ||| |||| |||||||||    
T  47431239 agttaaaacttatgagaccaaattgaataaaagaaataaattaagggactgacaaatcaattaa 47431302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 50879560 - 50879517
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaa 61  Q
    |||||| | |||| ||||||||||||||||||||||||||||||    
T  50879560 agttaagatttatgggaccaaattgaataaaagaaataagttaa 50879517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 365
Target Start/End: Complemental strand, 52411661 - 52411562
Alignment:
Q  266 taataaagtcatgtttgtacttaaaattgggaaactccttataatgaatttaatgttccccaaaagttttcagacacgccttacgacaaataagacacac 365  Q
    ||||||||||||||   ||||||||  || ||| ||||||| ||||||    ||| ||||||||||| ||||| |||||||||||||||| | |||||||    
T  52411661 taataaagtcatgtcaatacttaaagctgagaagctccttacaatgaacgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacac 52411562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 55209848 - 55209805
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaa 61  Q
    |||||||| |||| | ||||||||||||||||||||||||||||    
T  55209848 agttaaaacttatggaaccaaattgaataaaagaaataagttaa 55209805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 5689782 - 5689720
Alignment:
Q  27 ttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcccattt 89  Q
    |||| |||||||||| ||||||||||||||| |||  || ||||| |||||||||||| ||||    
T  5689782 ttatgggaccaaatttaataaaagaaataagctaagggagcgacagatcaattaagcctattt 5689720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 39583090 - 39583032
Alignment:
Q  182 taagtgttgatcttctatatattgggtcaatcataaagtttacatgcgtctccttcttc 240  Q
    ||||||| |||||||||| || ||||||||||| |||||| |||| || ||||||||||    
T  39583090 taagtgtcgatcttctatctagtgggtcaatcagaaagttcacatacgcctccttcttc 39583032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 46986142 - 46986208
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||||||||||||||||||| ||||  | ||| || ||||||||||||    
T  46986142 agttaagacttattggaccaaattgaataaaagaaataaattaaggggccggcaaatcaattaagcc 46986208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 53101606 - 53101545
Alignment:
Q  20 ttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaag 82  Q
    |||| ||||||||| |||||||||||||||| ||||| ||||| ||||| || ||||||||||    
T  53101606 ttaagagttataggcccaaattgaataaaag-aataaattaaaggaccggcagatcaattaag 53101545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 2233311 - 2233340
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  2233311 ggaccaaattgaataaaagaaataagttaa 2233340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 15290559 - 15290604
Alignment:
Q  36 caaattgaataaaagaaataagttaaaagaccgacatatcaattaa 81  Q
    |||||| |||||||||||||||||||  |||||||| |||||||||    
T  15290559 caaattaaataaaagaaataagttaagggaccgacagatcaattaa 15290604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 23072171 - 23072142
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  23072171 ggaccaaattgaataaaagaaataagttaa 23072142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 28776505 - 28776448
Alignment:
Q  27 ttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||| |||||||||||||| |||||| ||||| ||| || | ||||||||||||    
T  28776505 ttataggatcaaattgaataaaaaaaataaattaaaggactgatagatcaattaagcc 28776448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 35758116 - 35758087
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  35758116 ggaccaaattgaataaaagaaataagttaa 35758087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 53766034 - 53766083
Alignment:
Q  34 accaaattgaataaaagaaataagttaaaagaccgacatatcaattaagc 83  Q
    ||||||||||||||||||||||||||||  ||||  || |||||||||||    
T  53766034 accaaattgaataaaagaaataagttaagggacccgcagatcaattaagc 53766083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 5691165 - 5691209
Alignment:
Q  37 aaattgaataaaagaaataagttaaaagaccgacatatcaattaa 81  Q
    |||||||||||||||||||||||||  ||||| || |||||||||    
T  5691165 aaattgaataaaagaaataagttaagggaccggcagatcaattaa 5691209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 17742360 - 17742388
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaa 61  Q
    |||||||||||||||||||||||||||||    
T  17742360 gaccaaattgaataaaagaaataagttaa 17742388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 19043680 - 19043708
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaa 61  Q
    |||||||||||||||||||||||||||||    
T  19043680 gaccaaattgaataaaagaaataagttaa 19043708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 21729240 - 21729296
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatat 74  Q
    ||||| || |||| |||| |||||||||||||||||||| ||||  |||||||||||    
T  21729240 agttagaacttatgggactaaattgaataaaagaaataaattaagggaccgacatat 21729296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 27750485 - 27750549
Alignment:
Q  20 ttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| ||||  |||||||||||||||||||||||| ||||| ||| | || ||||||| ||||    
T  27750485 ttaaaacttatgagaccaaattgaataaaagaaataaattaaaggactggcagatcaattgagcc 27750549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 37610797 - 37610841
Alignment:
Q  37 aaattgaataaaagaaataagttaaaagaccgacatatcaattaa 81  Q
    |||||||||||||||||||||||||  ||||| || |||||||||    
T  37610797 aaattgaataaaagaaataagttaagggaccggcagatcaattaa 37610841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 46903632 - 46903660
Alignment:
Q  34 accaaattgaataaaagaaataagttaaa 62  Q
    |||||||||||||||||||||||||||||    
T  46903632 accaaattgaataaaagaaataagttaaa 46903660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 47429678 - 47429650
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaa 61  Q
    |||||||||||||||||||||||||||||    
T  47429678 gaccaaattgaataaaagaaataagttaa 47429650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 54354457 - 54354509
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||| ||||||||||||| |||||  ||||| || ||||||||||||    
T  54354457 ggaccaaattaaataaaagaaataggttaagggaccggcagatcaattaagcc 54354509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 51693213 - 51693147
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  51693213 agttaagacttatgggaccaaattgaataaaagaaataagttaagggaccgacagatcaattaagcc 51693147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 52086693 - 52086627
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||| |||| ||||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  52086693 agttaaaacttatgggaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 52086627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 25181567 - 25181502
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagc 83  Q
    |||||| | |||||||||||||||||||||||||||||||||||  ||||| || |||||||||||    
T  25181567 agttaagacttataggaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagc 25181502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 40187669 - 40187603
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||||||||||||||||||||| ||| ||||| || ||||||||||||    
T  40187669 agttaagacttatgggaccaaattgaataaaagaaataagtgaaaggaccgtcagatcaattaagcc 40187603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 52761602 - 52761654
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||||||||||||||||||||||||||   |||| |||||||||||||||    
T  52761602 ggaccaaattgaataaaagaaataagttaaggaaccggcatatcaattaagcc 52761654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 50483561 - 50483511
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||| |||||||||||| ||||||||||| ||||||||||||    
T  50483561 gaccaaattgaatacaagaaataagtt-aaagaccgacagatcaattaagcc 50483511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 7110292 - 7110226
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | ||||||||||||||| |||||||||||||| ||||  ||||| || ||||||||||||    
T  7110292 agttaagacttataggaccaaattaaataaaagaaataaattaagggaccggcagatcaattaagcc 7110226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 51468953 - 51469019
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| |||||||||||||||||| |||||||||||  ||| |||| ||||||||||||    
T  51468953 agttaagatttatgggaccaaattgaataaaaaaaataagttaagggactgacagatcaattaagcc 51469019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 45229670 - 45229718
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaa 81  Q
    |||||||||||||||||||||||| ||||  |||||||| |||||||||    
T  45229670 gaccaaattgaataaaagaaataaattaagggaccgacagatcaattaa 45229718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 1823363 - 1823410
Alignment:
Q  37 aaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||  ||||| || ||||||||||||    
T  1823363 aaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 1823410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 7111527 - 7111570
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaa 61  Q
    |||||| | |||||||||||||||||||||||||||||| ||||    
T  7111527 agttaagacttataggaccaaattgaataaaagaaataaattaa 7111570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 18820823 - 18820874
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||  |||||  | ||||||||||||    
T  18820823 gaccaaattgaataaaagaaataagttaagggaccggtagatcaattaagcc 18820874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 51468390 - 51468339
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||||||||||||| |||||||||||  ||||| || ||||||||||||    
T  51468390 gaccaaattgaataaaaaaaataagttaagggaccggcagatcaattaagcc 51468339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 17244232 - 17244198
Alignment:
Q  27 ttataggaccaaattgaataaaagaaataagttaa 61  Q
    |||| ||||||||||||||||||||||||||||||    
T  17244232 ttatgggaccaaattgaataaaagaaataagttaa 17244198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 62
Target Start/End: Complemental strand, 45228387 - 45228357
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaaa 62  Q
    |||||||||||||||||||||||||||||||    
T  45228387 ggaccaaattgaataaaagaaataagttaaa 45228357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 52087841 - 52087875
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagacc 67  Q
    ||||||||||||||||||||||||||||| |||||    
T  52087841 gaccaaattgaataaaagaaataagttaagagacc 52087875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 5488873 - 5488902
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  5488873 ggaccaaattgaataaaagaaataagttaa 5488902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 50485002 - 50485031
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  50485002 ggaccaaattgaataaaagaaataagttaa 50485031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 51468451 - 51468422
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  51468451 ggaccaaattgaataaaagaaataagttaa 51468422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 40723090 - 40723154
Alignment:
Q  20 ttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||||||||||| ||| ||||| ||||||| ||||||||| |||||  |  |||||||||||    
T  40723090 ttaaaagttataggatcaatttgaaaaaaagaattaagttaaaggaccgggagttcaattaagcc 40723154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 47533906 - 47533970
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaag 82  Q
    |||||||| |||| |||| ||||| |||||||||||||| |||| |||||  || ||||||||||    
T  47533906 agttaaaacttatgggactaaattaaataaaagaaataatttaagagaccagcagatcaattaag 47533970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 51693257 - 51693229
Alignment:
Q  34 accaaattgaataaaagaaataagttaaa 62  Q
    |||||||||||||||||||||||||||||    
T  51693257 accaaattgaataaaagaaataagttaaa 51693229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 104366 - 104301
Alignment:
Q  19 gttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||| |||| ||||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  104366 gttaaaacttatgggaccaaattgaataaaagaaataagttaagggaccgtcaaatcaattaagcc 104301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 35337 - 35403
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  35337 agttaagacttatgggaccaaattgaataaaagaaataagttaagggaccgccagatcaattaagcc 35403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 31084 - 31031
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagccca 86  Q
    |||||||||||||||||||||||||||||  ||||| || ||||||||||||||    
T  31084 gaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagccca 31031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 79475 - 79409
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  79475 agttaagacttatgggaccaaattgaataaaagaaataagttaagggaccgccagatcaattaagcc 79409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 83728 - 83781
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagccca 86  Q
    |||||||||||||||||||||||||||||  ||||| || ||||||||||||||    
T  83728 gaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagccca 83781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold1425
Description:

Target: scaffold1425; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 1669 - 1719
Alignment:
Q  34 accaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    ||||||||||||||||||||||||||||  ||||| || ||||||||||||    
T  1669 accaaattgaataaaagaaataagttaagggaccggcagatcaattaagcc 1719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 200 - 134
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||| ||||||||||||||||||||||||||  ||| | || ||||||||||||    
T  200 agttaagacttatgggatcaaattgaataaaagaaataagttaagggactggcagatcaattaagcc 134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 3079 - 3145
Alignment:
Q  18 agttaaaagttataggaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||| | |||| ||||||||||||||||||||||||||||||  ||| | || ||||||||||||    
T  3079 agttaagacttatgggaccaaattgaataaaagaaataagttaagggactggcagatcaattaagcc 3145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 1881 - 1852
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  1881 ggaccaaattgaataaaagaaataagttaa 1852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 3033 - 3062
Alignment:
Q  32 ggaccaaattgaataaaagaaataagttaa 61  Q
    ||||||||||||||||||||||||||||||    
T  3033 ggaccaaattgaataaaagaaataagttaa 3062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 25412 - 25463
Alignment:
Q  33 gaccaaattgaataaaagaaataagttaaaagaccgacatatcaattaagcc 84  Q
    |||||||||||||||||||||||||||||  || || || ||||||||||||    
T  25412 gaccaaattgaataaaagaaataagttaagggagcggcagatcaattaagcc 25463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University