View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13431_low_6 (Length: 374)
Name: NF13431_low_6
Description: NF13431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13431_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 92 - 261
Target Start/End: Original strand, 36468054 - 36468222
Alignment:
| Q |
92 |
tttcttgtttaaattagaaaatctcctacaagacaaaacacttcttctcaatagcaaaaaagacaaattttccattcaaatcttctcacgtcaagcgaaa |
191 |
Q |
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| T |
36468054 |
tttcttgtttaaattagaaaatctcctacaagacaaaacacttcttctcaatagcaaaaaagacaaattttcctttcaaatcttctcacgtcaagcgaaa |
36468153 |
T |
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| Q |
192 |
aaatgctagnnnnnnnnnnngacaagaaaaaatgctatttgtatcactcttgttcttccttcttcaacac |
261 |
Q |
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| T |
36468154 |
aaatgctag-ttttttttttgacaagaaaaaatgctagttgtatcactcttgttcttccttcttcaacac |
36468222 |
T |
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Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 271 - 329
Target Start/End: Original strand, 36468265 - 36468323
Alignment:
| Q |
271 |
tccctccactcttctattactcatcgcacaaactctgcacatcacacacactccattta |
329 |
Q |
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| T |
36468265 |
tccctccactcttctattactcatcgcacaaactctgcacatcacacacactccattta |
36468323 |
T |
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