View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13432_high_11 (Length: 261)
Name: NF13432_high_11
Description: NF13432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13432_high_11 |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 12735185 - 12735414
Alignment:
| Q |
15 |
tatcagtcaagcagaaaacttttaccttctcgtcctgttctgacgagaaggcaaccaccttataaccatcatttgaaatatcatagccaaatgtataccg |
114 |
Q |
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| T |
12735185 |
tatcagtcaagcagaaaacttttaccttttcgtcctgttctgacgagaaggcaaccaccttataaccatcatttgaaatatcatagccaaatgtataccg |
12735284 |
T |
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| Q |
115 |
aaaaaggttagctgaatacccgaatttttcagataatgtatttgtggctgggttccagagacggaaccacatgtctttgtaggtagaggcggcattccaa |
214 |
Q |
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| T |
12735285 |
aaaaaggttagttgaatacccgaatttttcagataatgtatttgtggctgggttccagagacggaaccacgtgtctttgtagttagcggcagcattccta |
12735384 |
T |
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| Q |
215 |
gaagcaccgcgcaaacatatcaatccattg |
244 |
Q |
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| T |
12735385 |
gaagcaccggacaaacatatcaatccattg |
12735414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 7745 - 7517
Alignment:
| Q |
15 |
tatcagtcaagcagaaaacttttaccttctcgtcctgttctgacgagaaggcaaccaccttataaccatcatttgaaatatcatagccaaatgtataccg |
114 |
Q |
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| T |
7745 |
tatcagtcaagcagaaaacttttagcttctcgtcagaaaaggacgagaaggcaaccaccttataaccatcatttgaaatatcatagccaaatgtataccg |
7646 |
T |
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| Q |
115 |
aaaaaggttagctgaatacccgaatttttcagataatgtatttgtggctgggttccagagacggaaccacatgtctttgtaggtagaggcggcattccaa |
214 |
Q |
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| T |
7645 |
aaaaaggatagttgaatacccgaatttttctgataatgtatttgtggctgggatccagagacagaaccacatgtcttcgtcgttagcggcggcattccaa |
7546 |
T |
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| Q |
215 |
gaagcaccgcgcaaacatatcaatccatt |
243 |
Q |
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| T |
7545 |
gaagcaccgtgcaaacatatcaatccatt |
7517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 19351469 - 19351584
Alignment:
| Q |
68 |
accaccttataaccatcatttgaaatatcatagccaaatgtataccgaaaaaggttagctgaatacccgaatttttcagataatgtatttgtggctgggt |
167 |
Q |
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| T |
19351469 |
accaccttataagtgtcatttgaaatatcatagccaaatgttaacttaaaaaatttagttgaataccctattttttcagataatgtctttgtggctgggt |
19351568 |
T |
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| Q |
168 |
tccagagacggaacca |
183 |
Q |
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| T |
19351569 |
tccagaaacgtaacca |
19351584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 18914050 - 18914093
Alignment:
| Q |
140 |
ttttcagataatgtatttgtggctgggttccagagacggaacca |
183 |
Q |
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| T |
18914050 |
ttttcagataatgaatttgtggctgggttccataaacggaacca |
18914093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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