View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13432_high_3 (Length: 433)
Name: NF13432_high_3
Description: NF13432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13432_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 9152383 - 9151984
Alignment:
| Q |
18 |
gtccaactttacaaagaaaccacaagatcgtagctgaaaaagagtcaagagaaagtccaactttccgaataaactacaggaggaatcaacaaagatttgg |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
9152383 |
gtccaactttacgaagaaaccacaagatcgtagctgacaaagagtcaagagaaagtccaactttccgaataaactacaggaggaatcaacgaggatttgg |
9152284 |
T |
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| Q |
118 |
atatcgacggagaagatgacttacaagacacgtttatttggagacacgtttgtatgaaaatgggtctttcaaacacgtgttataatataagacttaaatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9152283 |
atatcgacggagaagatgacttacaagacacgtttatttggagacacgtttgtatgaaaatggatctttcaaacacgtgttataatataagacttaaatt |
9152184 |
T |
|
| Q |
218 |
ttacggaatatcagctgacgtagaacaaattttggaagtgtgtcaacctacgacacgatctgttgagactagctcaacaaagtaactgtcatgatcgtgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9152183 |
ttacggaatatcagctgacgtagaacaaattttggaagtgtgtcaacctacgacacgatctgttgagactagctcaacaaagtaactgtcatgatcgtgg |
9152084 |
T |
|
| Q |
318 |
actgtcactgaattgacagttacttagttttctttctctaaaaataagagttctcataaagaacaaaagatcggatacttaatttctgaaaactactcct |
417 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9152083 |
actgtcagtgaattgacagttacttagttttctttctctaaaaataagagttctcataaagaacaaaagatcggatacttaatttctgaaaactactcct |
9151984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 9176231 - 9176627
Alignment:
| Q |
18 |
gtccaactttacaaagaaaccacaagatcgtagctgaaaaagagtcaagagaaagtccaactttccgaataaactacaggaggaatcaacaaagatttgg |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
9176231 |
gtccaactttacgaagaaaccacaagatcgtagctgacaaagagtcaagagaaagtccaactttccgaataaactacaggaggaatcaacgaggatttgg |
9176330 |
T |
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| Q |
118 |
atatcgacggagaagatgacttacaagacacgtttatttggagacacgtttgtatgaaaatgggtctttcaaacacgtgttataatataagacttaaatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9176331 |
atatcgacggagaagatgacttacaagacacgtttatttggagacacgtttgtatgaaaatggatctttcaaacacgtgttataatataagacttaaatt |
9176430 |
T |
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| Q |
218 |
ttacggaatatcagctgacgtagaacaaattttggaagtgtgtcaacctacgacacgatctgttgagactagctcaacaaagtaactgtcatgatcgtgg |
317 |
Q |
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| T |
9176431 |
ttacggaatatcatctgatgtagaacaaattttggaagtgtgtcaacctacgacacgatctgttgagactagctcaacaaagtaactgtcatgatcgtgg |
9176530 |
T |
|
| Q |
318 |
actgtcactgaattgacagttacttagttttctttctctaaaaataagagttctcataaagaacaaaagatcggatacttaatttctgaaaactact |
414 |
Q |
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| T |
9176531 |
actgtcactgaattgacagttacttagttttctttctctaaaaataagagttctcataaagaacaaaagatcggatacttaatttctgaaaactact |
9176627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 36319156 - 36319084
Alignment:
| Q |
336 |
gttacttagttttctttctctaaaaataagagttctcataaagaacaaaagatcggatacttaatttctgaaa |
408 |
Q |
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|||||||||||| | ||||||| ||||||||||||||| |||||| ||| || || ||||||||||||||||| |
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| T |
36319156 |
gttacttagtttaccttctctataaataagagttctcacaaagaagaaatgaccgaatacttaatttctgaaa |
36319084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 384
Target Start/End: Original strand, 24094439 - 24094533
Alignment:
| Q |
290 |
ctcaacaaagtaactgtcatgatcgtggactgtcactgaattgacagttacttagttttctttctctaaaaataagagttctcataaagaacaaa |
384 |
Q |
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||||||||||||||||||||||| || | | || ||| || ||||||||||||||||| ||||||| | |||||| |||| ||| ||||||||| |
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| T |
24094439 |
ctcaacaaagtaactgtcatgattgtagtcagttactaaagtgacagttacttagtttcctttctcaataaataaaagttttcacgaagaacaaa |
24094533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 17898939 - 17898881
Alignment:
| Q |
331 |
tgacagttacttagttttctttctctaaaaataagagttctcataaagaacaaaagatc |
389 |
Q |
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|||| |||||||| |||||||||| || ||||||||||||||| |||||||||| |||| |
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| T |
17898939 |
tgacggttacttaattttctttctttataaataagagttctcacaaagaacaaatgatc |
17898881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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