View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13432_high_5 (Length: 408)

Name: NF13432_high_5
Description: NF13432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13432_high_5
NF13432_high_5
[»] chr3 (4 HSPs)
chr3 (1-388)||(12734764-12735151)
chr3 (32-395)||(32578832-32579186)
chr3 (278-365)||(25901276-25901363)
chr3 (278-365)||(25915294-25915381)
[»] scaffold0464 (1 HSPs)
scaffold0464 (1-395)||(7779-8164)
[»] chr7 (13 HSPs)
chr7 (59-387)||(19357683-19358005)
chr7 (32-395)||(19779351-19779705)
chr7 (32-395)||(19887678-19888032)
chr7 (52-383)||(19351048-19351370)
chr7 (31-380)||(19721769-19722106)
chr7 (291-372)||(19344565-19344646)
chr7 (292-384)||(29430979-29431071)
chr7 (292-376)||(29454089-29454173)
chr7 (59-97)||(18953167-18953205)
chr7 (59-97)||(18983214-18983252)
chr7 (280-364)||(22028616-22028700)
chr7 (316-384)||(29867260-29867328)
chr7 (328-384)||(29874547-29874603)
[»] chr2 (9 HSPs)
chr2 (54-389)||(18908782-18909108)
chr2 (100-395)||(18920732-18921027)
chr2 (121-389)||(18913530-18913798)
chr2 (321-384)||(22051727-22051790)
chr2 (290-360)||(25377072-25377142)
chr2 (254-375)||(554438-554559)
chr2 (278-383)||(14514886-14514991)
chr2 (54-95)||(18913815-18913856)
chr2 (281-346)||(20975547-20975612)
[»] chr6 (1 HSPs)
chr6 (59-380)||(14749173-14749485)
[»] chr5 (3 HSPs)
chr5 (264-364)||(29597550-29597650)
chr5 (286-379)||(28763888-28763981)
chr5 (66-98)||(28764166-28764198)
[»] chr4 (2 HSPs)
chr4 (278-360)||(10553548-10553630)
chr4 (264-374)||(53790525-53790635)
[»] chr1 (1 HSPs)
chr1 (292-382)||(4366475-4366565)


Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 12735151 - 12734764
Alignment:
Q  1 ttccttttggcctctgtcgtcgccgtttctattgtcatccatttgcgagtcatggtgcgtatgtgagtggcactattaactggttggctattcgaaatat 100  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  12735151 ttccttttggactctgtcgtagccgtttctattgtcatccatttgcgagtcatggtgcgtatgtaagtggcactgttaactggttggctattcgaaatat 12735052  T
Q  101 tcgaaatatgaatgaatatgaatggaatgatatttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacattcaggcagttgctgcca 200  Q
    |  |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||    
T  12735051 taaaaatatgaatgaatatgaatggaatgatatttcagtcaaccaatttgtgatcgtatcacttgttctggctacagagacatttaggcagttgttgcca 12734952  T
Q  201 cccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccattttgttt 300  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12734951 cccaacggttttgttgaaataccacctgttgagccatctgttactgtattgatggatcgtctatgtttttctcaccgtttcaagggaacccattttgttt 12734852  T
Q  301 tatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcat 388  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12734851 tatggatgatgttggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcat 12734764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 32 - 395
Target Start/End: Complemental strand, 32579186 - 32578832
Alignment:
Q  32 ttgtcatccatttgcgagtcatggtgcgtatgtgagtggcactattaactggttggctattcgaaatattcgaaatatgaatgaatatgaatggaatgat 131  Q
    ||||||||||| || || | | |||| ||||||||||||||||||||| |||||||||||||||||||          || |||||||||| ||||||||    
T  32579186 ttgtcatccatatgtgaataacggtgtgtatgtgagtggcactattaattggttggctattcgaaataa---------gactgaatatgaaaggaatgat 32579096  T
Q  132 atttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacattcaggcagttgctgccacccaacggttttgttgaagtaccacctgttg 231  Q
    ||||||||| | |||||| | || |||||||||| |||| |||| ||||||| | | || ||||||||| |  | || ||||||||||||||||| ||||    
T  32579095 atttcaatcgagcaatttctcattttatcacttgatctgactacggagacataccgacatttgctgccatcgcagggatttgttgaagtaccaccggttg 32578996  T
Q  232 agccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccattttgttttatggatgatgatggaattcggagttcaaga 331  Q
    ||||| |||||||||| |||||| || |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| | ||||||||| ||    
T  32578995 agccagctgttactgtgttgatggattgtctatgtttttctcaccgtttcaaggagacccattttgttttatggatgatgatggagtacggagttcacga 32578896  T
Q  332 ttcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcattactgat 395  Q
     ||||||| |||||| ||||| |||||||||||||| |||||||||||||||||||||| ||||    
T  32578895 gtcttggactcaattcctcaagattagttttcaggaccttcaaattgattatggcattagtgat 32578832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 365
Target Start/End: Complemental strand, 25901363 - 25901276
Alignment:
Q  278 tttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcag 365  Q
    ||||||||||| |||||||||| ||||||  |||| ||| ||  |||||||||| ||||||||||||||  | |||||||||| ||||    
T  25901363 tttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcag 25901276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 365
Target Start/End: Complemental strand, 25915381 - 25915294
Alignment:
Q  278 tttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcag 365  Q
    ||||||||||| |||||||||| ||||||  |||| ||| ||  |||||||||| ||||||||||||||  | |||||||||| ||||    
T  25915381 tttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcag 25915294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 7779 - 8164
Alignment:
Q  1 ttccttttggcctctgtcgtcgccgtttctattgtcatccatttgcgagtcatggtgcgtatgtgagtggcactattaactggttggctattcgaaatat 100  Q
    ||||||||| |||||||| | | |||||| ||||||||||||||| ||| | |||||||||||||||||||||| |||||||||||||||||            
T  7779 ttccttttgacctctgtcatagacgtttcaattgtcatccatttgtgagccgtggtgcgtatgtgagtggcactgttaactggttggctatt-------- 7870  T
Q  101 tcgaaatatgaatgaatatgaatggaatgatatttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacattcaggcagttgctgcca 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  7871 -cgaaatatgaatgaatatgaatggaatgatatttcaatcaaccaatttgtgatcgtatcacttgttctggctacagagacatttaggcagttgctgcca 7969  T
Q  201 cccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccattttgttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7970 cccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccattttgttt 8069  T
Q  301 tatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcattactgat 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8070 tatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcattagtgat 8164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 59 - 387
Target Start/End: Original strand, 19357683 - 19358005
Alignment:
Q  59 gtatgtgagtggcactattaactggttggctattcgaaatattcgaaatatgaatgaatatgaatggaatgatatttcaatcaaccaatttgtgatctta 158  Q
    ||||||||| ||||||||||||||||||||||||||||||||  ||    ||| | |||||||||||  ||||||| ||||  | |||||||||||| |     
T  19357683 gtatgtgagaggcactattaactggttggctattcgaaatat--gac---tga-tcaatatgaatggcgtgatattacaattgatcaatttgtgatcgtc 19357776  T
Q  159 tcacttgttctggctacagagacattcaggcagttgctgccacccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgatgaatc 258  Q
    ||||||| |||||| || |||||||  ||||||||||||||||| | |||||||||||||||||||||| || |||||| ||| |||||||||||| ||     
T  19357777 tcacttgatctggccacggagacatataggcagttgctgccacctagcggttttgttgaagtaccacctattcagccatttgtaactgtattgatggata 19357876  T
Q  259 gtctatgtttttctcaccgtttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattag 358  Q
    |||||||||||||||||  |||||| || |||||||| |||||||||| |||||||||||| ||||||||||| ||||||| ||||||  | ||||||||    
T  19357877 gtctatgtttttctcactatttcaaagggacccatttcgttttatggaagatgatggaatttggagttcaagagtcttggactcaattcttaaaaattag 19357976  T
Q  359 ttttcaggatcttcaaattgattatggca 387  Q
    |||||||||||||||||||||||||||||    
T  19357977 ttttcaggatcttcaaattgattatggca 19358005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 32 - 395
Target Start/End: Original strand, 19779351 - 19779705
Alignment:
Q  32 ttgtcatccatttgcgagtcatggtgcgtatgtgagtggcactattaactggttggctattcgaaatattcgaaatatgaatgaatatgaatggaatgat 131  Q
    ||||||||||| || || | ||||||  ||||||||||||||||||||||||||| |||||| |||||          ||  |||||||| |||||||||    
T  19779351 ttgtcatccatatgtgaataatggtgtttatgtgagtggcactattaactggttgactattcaaaataa---------gaccgaatatgagtggaatgat 19779441  T
Q  132 atttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacattcaggcagttgctgccacccaacggttttgttgaagtaccacctgttg 231  Q
    ||||||||  | |||||| | ||| | ||||||| |||| |||| ||||| | |   || |||| ||||||  | || |||||||| |||||||||||||    
T  19779442 atttcaattgatcaatttctcatcctctcacttgatctgactaccgagacgtaccaacatttgcggccacctcagggatttgttgatgtaccacctgttg 19779541  T
Q  232 agccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccattttgttttatggatgatgatggaattcggagttcaaga 331  Q
    | ||| ||||||||||||||||| || ||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||| | ||||||||||||    
T  19779542 atccagctgttactgtattgatggattgtctatgtttttctcaccgttccaaggagacccattttgttttatggttgatgatggagtacggagttcaaga 19779641  T
Q  332 ttcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcattactgat 395  Q
     ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  19779642 ctcttggactcaattcctcaaaattagttttcaggaccttcaaattgattatggcattagtgat 19779705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 32 - 395
Target Start/End: Complemental strand, 19888032 - 19887678
Alignment:
Q  32 ttgtcatccatttgcgagtcatggtgcgtatgtgagtggcactattaactggttggctattcgaaatattcgaaatatgaatgaatatgaatggaatgat 131  Q
    ||||||||||| || || | ||||||  ||||||||||||||||||||||||||| |||||| |||||          ||  |||||||| |||||||||    
T  19888032 ttgtcatccatatgtgaataatggtgtttatgtgagtggcactattaactggttgactattcaaaataa---------gaccgaatatgagtggaatgat 19887942  T
Q  132 atttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacattcaggcagttgctgccacccaacggttttgttgaagtaccacctgttg 231  Q
    ||||||||  | |||||| | ||| | ||||||| |||| |||| ||||| | |   || |||| ||||||  | || |||||||| |||||||||||||    
T  19887941 atttcaattgatcaatttctcatcctctcacttgatctgactaccgagacgtaccaacatttgcggccacctcagggatttgttgatgtaccacctgttg 19887842  T
Q  232 agccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccattttgttttatggatgatgatggaattcggagttcaaga 331  Q
    | ||| ||||||||||||||||| || ||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||| | ||||||||||||    
T  19887841 atccagctgttactgtattgatggattgtctatgtttttctcaccgttccaaggagacccattttgttttatggttgatgatggagtacggagttcaaga 19887742  T
Q  332 ttcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcattactgat 395  Q
     ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  19887741 ctcttggactcaattcctcaaaattagttttcaggaccttcaaattgattatggcattagtgat 19887678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 52 - 383
Target Start/End: Complemental strand, 19351370 - 19351048
Alignment:
Q  52 atggtgcgtatgtgagtggcactattaactggttggctattcgaaatattcgaaatatgaatgaatatgaatggaatgatatttcaatcaaccaatttgt 151  Q
    |||||| ||||||||||||  ||||||||||||||||||||| |||||||         | | ||||| ||||||||||||||  |||| | ||||||||    
T  19351370 atggtgtgtatgtgagtggatctattaactggttggctattcaaaatatt---------actaaatataaatggaatgatattagaatcgagcaatttgt 19351280  T
Q  152 gatcttatcacttgttctggctacagagacat-tcaggcagttgctgccacccaacggttttgttgaagtaccacctgttgagccatctgttactgtatt 250  Q
    |||  | ||||||| ||||| ||| ||||||| |||  |||||  |||||||    |||||||||||||||||||||| ||||||||| |||||||||||    
T  19351279 gattatttcacttgatctgggtacggagacatatcaa-cagtttttgccacctcgtggttttgttgaagtaccacctgctgagccatccgttactgtatt 19351181  T
Q  251 gatgaatcgtctatgtttttctcaccgtttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctc 350  Q
    |||| || |||||||||||||||||  | ||||  | ||||||||||||||||||  |||||||||||| |||||| | || ||||||| || ||| |||    
T  19351180 gatggattgtctatgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctc 19351081  T
Q  351 aaaattagttttcaggatcttcaaattgattat 383  Q
    ||||||||||||||||||||||| |||||||||    
T  19351080 aaaattagttttcaggatcttcacattgattat 19351048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 31 - 380
Target Start/End: Original strand, 19721769 - 19722106
Alignment:
Q  31 attgtcatccatttgcgagtcatggtgcgtatgtgagtggcactattaactggttggctattcgaaatattcgaaatatgaatgaatatgaatggaatga 130  Q
    ||||||||||||||| || | ||||||  |||||||| ||||||||||||||||||||||||||||| |          || ||| ||| |||||| |||    
T  19721769 attgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggctattcgaaacac---------gactgagtatcaatggactga 19721859  T
Q  131 tatttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacat-tcaggcagttgctgccacccaacggttttgttgaagtaccacctgt 229  Q
    ||||| | || | |||||||| ||  | || |||| ||||||||| ||||||| |||  ||| || |||||||  | || ||||||||||||||| ||||    
T  19721860 tattttagtcgagcaatttgtaattgtctcgcttgatctggctacggagacatatcaa-cagctgttgccacctgaggggtttgttgaagtaccaactgt 19721958  T
Q  230 tgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccattttgttttatggatgatgatggaattcggagttcaa 329  Q
    |||||| |||||||||||||||||| |  ||||||||||||||||| ||||  ||||     ||||||||||||||| |||||||||||| |||||||||    
T  19721959 tgagccgtctgttactgtattgatggactgtctatgtttttctcacagttttcagggtt---attttgttttatggaagatgatggaatttggagttcaa 19722055  T
Q  330 gattcttggattcaatttctcaaaattagttttcaggatcttcaaattgat 380  Q
    |||||||||| |||||| |||||||| |||||| || ||| | ||||||||    
T  19722056 gattcttggactcaattcctcaaaatcagtttttagaatcatgaaattgat 19722106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 372
Target Start/End: Complemental strand, 19344646 - 19344565
Alignment:
Q  291 cattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttc 372  Q
    ||||||||| |||||  |||||||||||| |||||| || | ||||||| ||||||||| ||||||||||||||| ||||||    
T  19344646 cattttgttatatggcagatgatggaatttggagttgaacaatcttggactcaatttcttaaaattagttttcagaatcttc 19344565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 384
Target Start/End: Complemental strand, 29431071 - 29430979
Alignment:
Q  292 attttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatg 384  Q
    |||||||| |||||  ||||||| |||| || | | ||||||||||||  ||||| || |||||||||| ||||||||||||||| |||||||    
T  29431071 attttgttatatggcggatgatgaaatttggggctaaagattcttggacccaattccttaaaattagttatcaggatcttcaaatagattatg 29430979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 376
Target Start/End: Complemental strand, 29454173 - 29454089
Alignment:
Q  292 attttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaat 376  Q
    |||||||| |||||  ||||||| |||| |||||| |||||||||||| ||||||  | |||||||||| ||| |||||||||||    
T  29454173 attttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaattagttatcaagatcttcaaat 29454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 18953205 - 18953167
Alignment:
Q  59 gtatgtgagtggcactattaactggttggctattcgaaa 97  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  18953205 gtatgtgagtggcactgttaactggttggccattcgaaa 18953167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 18983252 - 18983214
Alignment:
Q  59 gtatgtgagtggcactattaactggttggctattcgaaa 97  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  18983252 gtatgtgagtggcactgttaactggttggccattcgaaa 18983214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 364
Target Start/End: Original strand, 22028616 - 22028700
Alignment:
Q  280 tcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttca 364  Q
    |||||| ||||||||||||| ||||||  |||| ||| |  |||||| |||| ||||||| |||||| || || |||||||||||    
T  22028616 tcaaggaaacccattttgttatatggaaaatgacggattatggagttgaagagtcttggactcaattacttaagattagttttca 22028700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 29867260 - 29867328
Alignment:
Q  316 aattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatg 384  Q
    ||||||| ||| |||||||||||| |||||| || | ||||||||  ||  ||||||||||||||||||    
T  29867260 aattcggggttgaagattcttggactcaattccttagaattagttaccataatcttcaaattgattatg 29867328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 29874547 - 29874603
Alignment:
Q  328 aagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatg 384  Q
    |||||||||||| || ||| || |||||||||| |||  ||||||||||||||||||    
T  29874547 aagattcttggactccattacttaaaattagttatcaaaatcttcaaattgattatg 29874603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 54 - 389
Target Start/End: Complemental strand, 18909108 - 18908782
Alignment:
Q  54 ggtgcgtatgtgagtggcactattaactggttggctattcgaaatattcgaaatatgaatgaatatgaatggaatgatatttcaatcaaccaatttgtga 153  Q
    |||| ||||||||||||  |||||||||||||||||||         |||| ||| || |||||||||||||||||||||| | ||||| ||||||||||    
T  18909108 ggtgtgtatgtgagtggttctattaactggttggctat---------tcgagataagactgaatatgaatggaatgatattactatcaaacaatttgtga 18909018  T
Q  154 tcttatcacttgttctggctacagagacattcaggcagttgctgccacccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgat 253  Q
    |  | || |||| | ||| |||||||||||   |||| ||||||||||| | ||||||||||||||||||||||||||| || ||||||| ||| |||||    
T  18909017 tagtctcgcttgatttggatacagagacatatcggcaattgctgccacctagcggttttgttgaagtaccacctgttgaaccgtctgttagtgtgttgat 18908918  T
Q  254 gaatcgtctatgtttttctcaccgtttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaa 353  Q
    | || |||||||||||||||||||||| |  | ||||||||||||| |||||| |||||||||||| ||||||||||| ||||||| |||||| ||||||    
T  18908917 ggattgtctatgtttttctcaccgttttagagaaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaa 18908818  T
Q  354 attagttttcaggatcttcaaattgattatggcatt 389  Q
    |||||||||||  ||||||| |||||||||||||||    
T  18908817 attagttttcaaaatcttcatattgattatggcatt 18908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 100 - 395
Target Start/End: Complemental strand, 18921027 - 18920732
Alignment:
Q  100 ttcgaaatatgaatgaatatgaatggaatgatatttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacattcaggcagttgctgcc 199  Q
    ||||| ||| || |||||||||||||||||||||| | ||||| |||||||||||  | || |||| | ||| |||||||||||   |||| ||||||||    
T  18921027 ttcgagataagactgaatatgaatggaatgatattactatcaaacaatttgtgatagtctcgcttgatttggttacagagacatatcggcaattgctgcc 18920928  T
Q  200 acccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccattttgtt 299  Q
    ||| | ||||||||||||||||||||||||||| || ||||||| ||| |||||| || || ||||||||||||||||||| |  | |||||||||||||    
T  18920927 acctagcggttttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtatatgtttttctcaccgttttagagaaacccattttgtt 18920828  T
Q  300 ttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcattactgat 395  Q
     |||||| |||||||||||| ||||||||||| ||||||| |||||| |||||||||||||||||  ||||||| |||||||||||||||| ||||    
T  18920827 atatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgattatggcattagtgat 18920732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 121 - 389
Target Start/End: Complemental strand, 18913798 - 18913530
Alignment:
Q  121 aatggaatgatatttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacattcaggcagttgctgccacccaacggttttgttgaagt 220  Q
    |||||||||||||| | ||  | |||||||||||  | || |||| | ||||||||||||||| |   |||||| ||||||| | ||||||||||||||     
T  18913798 aatggaatgatattaccattgaacaatttgtgatagtctcgcttgatttggctacagagacataccaacagttgttgccacctagcggttttgttgaagc 18913699  T
Q  221 accacctgttgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccattttgttttatggatgatgatggaattc 320  Q
    |||||| ||||| || ||||||| ||| |||||| || |||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||     
T  18913698 accacccgttgaaccgtctgttagtgtgttgatggattgtctatgtttttctcaccgtttcaggggaacccattttgttatatggaagatgatggaattt 18913599  T
Q  321 ggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcatt 389  Q
    ||||||||||| ||||||| |||||| |||||||||||||||||  ||||||| |||||||||||||||    
T  18913598 ggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgattatggcatt 18913530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 22051790 - 22051727
Alignment:
Q  321 ggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatg 384  Q
    ||||||||||| | ||||| ||||||| |||||||||||| |||| ||||||||||||||||||    
T  22051790 ggagttcaagaatattggactcaatttttcaaaattagttatcagaatcttcaaattgattatg 22051727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 360
Target Start/End: Original strand, 25377072 - 25377142
Alignment:
Q  290 ccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagtt 360  Q
    |||||||||| |||||||||||| ||| || ||||||||||| ||||||||||||||  | ||||||||||    
T  25377072 ccattttgttatatggatgatgaaggattttggagttcaagagtcttggattcaattatttaaaattagtt 25377142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 375
Target Start/End: Original strand, 554438 - 554559
Alignment:
Q  254 gaatcgtctatgtttttctcaccgtttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaa 353  Q
    |||| |||| ||||||||||||  |||  ||||||||||| || || |||||   ||||| ||||  |||||| |||| ||||||| |||||| || |||    
T  554438 gaattgtctttgtttttctcacgattttgagggaacccatcttattatatggcaaatgatagaatatggagttaaagagtcttggactcaattacttaaa 554537  T
Q  354 attagttttcaggatcttcaaa 375  Q
    ||||||| | ||| ||||||||    
T  554538 attagttatgaggttcttcaaa 554559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 383
Target Start/End: Original strand, 14514886 - 14514991
Alignment:
Q  278 tttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaatt 377  Q
    |||||||  ||||||| ||||| ||||||  |||   ||||| |||||| |||||||||||| |||||| || |||||||||| |  | ||||||||||     
T  14514886 tttcaagaaaacccatcttgttatatggaaaatggatgaatttggagttgaagattcttggactcaattccttaaaattagttatatgaatcttcaaata 14514985  T
Q  378 gattat 383  Q
    ||||||    
T  14514986 gattat 14514991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 18913856 - 18913815
Alignment:
Q  54 ggtgcgtatgtgagtggcactattaactggttggctattcga 95  Q
    |||| |||||||||||| || |||||||||||||||||||||    
T  18913856 ggtgtgtatgtgagtggaacaattaactggttggctattcga 18913815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 20975547 - 20975612
Alignment:
Q  281 caagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatt 346  Q
    ||||||||  ||||||||| |||||   |||| |||||| |||||| |||||||||||||||||||    
T  20975547 caagggaaatcattttgttatatggcaaatgagggaatttggagttgaagattcttggattcaatt 20975612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 59 - 380
Target Start/End: Original strand, 14749173 - 14749485
Alignment:
Q  59 gtatgtgagtggcactattaactggttggctattcgaaatattcgaaatatgaatgaatatgaatggaatgatatttcaatcaaccaatttgtgatctta 158  Q
    |||||||||||||| |||||||||||||||||||| |||||          ||  |||||||| | |||||||||||||||| |||||||| | ||  |     
T  14749173 gtatgtgagtggcagtattaactggttggctattcaaaataa---------gaccgaatatgattagaatgatatttcaatcgaccaatttctcattgtt 14749263  T
Q  159 tcacttgttctggctacagagacattcaggcagttgctgccacccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgatgaatc 258  Q
    ||||||| |||  |||| ||||||| | | |  ||  |||||||  | || ||||||||||||||| |||||||||||||||||||  | |||||| ||     
T  14749264 tcacttgatctaactacggagacataccgtcgtttcttgccacctcagggatttgttgaagtaccatctgttgagccatctgttaccattttgatggatt 14749363  T
Q  259 gtctatgtttttctcaccgtttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattag 358  Q
    ||||||||||||||||||||||||| |  ||||||||||||||||||| |||||||||||| ||||||||||| ||||||| |||||| |||||||||||    
T  14749364 gtctatgtttttctcaccgtttcaaagagacccattttgttttatggaggatgatggaatttggagttcaagagtcttggactcaattcctcaaaattag 14749463  T
Q  359 ttttcaggatcttcaaattgat 380  Q
      ||||||| ||||||||||||    
T  14749464 ccttcaggaccttcaaattgat 14749485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 364
Target Start/End: Complemental strand, 29597650 - 29597550
Alignment:
Q  264 tgtttttctcaccgtttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttc 363  Q
    ||||||||||||| |||||||| ||| ||||||||| |||||   ||||| ||||| |||||| || | ||||||| |||||| || |||||||||||||    
T  29597650 tgtttttctcaccatttcaaggaaactcattttgttatatggcaaatgattgaatttggagttgaacaatcttggactcaattccttaaaattagttttc 29597551  T
Q  364 a 364  Q
    |    
T  29597550 a 29597550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 379
Target Start/End: Complemental strand, 28763981 - 28763888
Alignment:
Q  286 gaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattga 379  Q
    |||||||||||||| |||||| ||||| | |||| |||||| || | ||||||| || ||| |||||||| || | ||||||||||||||||||    
T  28763981 gaacccattttgttatatggaagatgacgcaatttggagttgaaaagtcttggagtcgattcctcaaaatcagctatcaggatcttcaaattga 28763888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 28764198 - 28764166
Alignment:
Q  66 agtggcactattaactggttggctattcgaaat 98  Q
    |||||||||||||||||||||||||||| ||||    
T  28764198 agtggcactattaactggttggctattcaaaat 28764166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 360
Target Start/End: Complemental strand, 10553630 - 10553548
Alignment:
Q  278 tttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagtt 360  Q
    ||||||||||| |||| ||||||||||||  ||||  || || ||||||||||| ||||||||||| || || || |||||||    
T  10553630 tttcaagggaagccatcttgttttatggaaaatgacagattttggagttcaagagtcttggattcagttgcttaacattagtt 10553548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 53790525 - 53790635
Alignment:
Q  264 tgtttttctcaccgtttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttc 363  Q
    ||||||||||||  | | ||| |||| |||||| || |||||| |||||   |||| ||| || || | ||||||| ||||||||| |||||||||||||    
T  53790525 tgtttttctcactatgttaagagaactcattttattatatggaagatgacaaaatttggatttgaacaatcttggactcaatttcttaaaattagttttc 53790624  T
Q  364 aggatcttcaa 374  Q
    || ||||||||    
T  53790625 agaatcttcaa 53790635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 382
Target Start/End: Complemental strand, 4366565 - 4366475
Alignment:
Q  292 attttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgatta 382  Q
    ||||||||||||||  ||||| | ||||||| ||| |||| ||||||| || |||||| ||| ||||||  ||| |||||||||| |||||    
T  4366565 attttgttttatggcagatgaagaaattcggggttgaagagtcttggactccatttcttaaagttagttaccagaatcttcaaatagatta 4366475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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