View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13432_high_8 (Length: 312)
Name: NF13432_high_8
Description: NF13432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13432_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 8284902 - 8285202
Alignment:
| Q |
1 |
ggtttcatgaactatggaagtgaaaatggaaactcctcaatggttcaacccttacctcaacagaatgttgatgtacctctagttaatcatgagatcacca |
100 |
Q |
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| T |
8284902 |
ggtttcatgaactatggaagtgaaaatggaaactcctcaatggttcaacccttacctcaacagaatgttgatgtacctctagttaatcatgagatcacca |
8285001 |
T |
|
| Q |
101 |
tgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattcaagaggaagcaatgaatatgattcacatgtaccagca |
200 |
Q |
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| T |
8285002 |
tgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattcaagaggaagcaatgaatatgattcacatgtaccagca |
8285101 |
T |
|
| Q |
201 |
agacccacaacttaattttggtgttgctacaacatcaagcaatgatgatgagtcagttgatcttgctcctcttcctcctactaccattggtgcacctgat |
300 |
Q |
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| T |
8285102 |
agacccacaacttaattttggtgttgctacaacatcaagcaatgatgatgagtcagttgatcttgctcctcttcctcctactaccattggtgcacctgat |
8285201 |
T |
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| Q |
301 |
g |
301 |
Q |
| |
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| |
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| T |
8285202 |
g |
8285202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 34687150 - 34687276
Alignment:
| Q |
149 |
atcaagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatga |
248 |
Q |
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| T |
34687150 |
atcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatga |
34687249 |
T |
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| Q |
249 |
tgagtcagttgatcttgctcctcttcctcc |
278 |
Q |
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| T |
34687250 |
t---tcaactgatcttgctcctctacctcc |
34687276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 278
Target Start/End: Original strand, 34694979 - 34695205
Alignment:
| Q |
52 |
ttacctcaacagaatgttgatgtacctctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatc |
151 |
Q |
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||||||||| | ||||||||| | |||||| ||||| |||| | || |||||||||||||| |||| |||||| |||||| ||| ||| | ||||| |
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| T |
34694979 |
ttacctcaagaaaatgttgatctgcctctacttaattatgataacatcatgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatc |
34695078 |
T |
|
| Q |
152 |
aagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatga |
251 |
Q |
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||||||| ||||||||||| | || ||||||| || ||| | || |||||||||||||||||||||||||| | ||| | ||||| ||||||||| | |
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| T |
34695079 |
aagagaatattcaagaggagtcgattcatatgatgcatatgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatca |
34695178 |
T |
|
| Q |
252 |
gtcagttgatcttgctcctcttcctcc |
278 |
Q |
| |
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||| ||||||||||||||| ||||| |
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| T |
34695179 |
ttcaactgatcttgctcctctccctcc |
34695205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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