View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13432_high_9 (Length: 307)
Name: NF13432_high_9
Description: NF13432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13432_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 297
Target Start/End: Original strand, 5654731 - 5655008
Alignment:
| Q |
20 |
gagatcattgacttcaatgataattgacaattgtgcagcaaagacatgctcattttttatcaagaagcnnnnnnntgagtgtatacatgttttggtgtct |
119 |
Q |
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| T |
5654731 |
gagatcattgacttcaatgataattgatgattgtgcagcaaagacatgctcattttttatcaagcagcaaaaaaatgagtgtatacatgttttggtgtct |
5654830 |
T |
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| Q |
120 |
agacataatttcaaatgcgaatgccagagcctatgaaatattgacacaaacacgaatactaggtaagacactgatacatacatttgaaaaatgtatcaga |
219 |
Q |
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| T |
5654831 |
agacataatttcaaatgcgaatgccggagcctatgaaatattgacacaaacacgaatactaggtaagacactgatacatacatttgaaaaatgtatcaga |
5654930 |
T |
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| Q |
220 |
cgccaaaaggaacacacttaactgctaaaagaaacaacataattacatttgactatgcaacctttgctgtaacctatg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5654931 |
cgccaaaaggaacacacttaactgctaaaagaaacaacataattacatttgactatgcaacctttgctgtaacctatg |
5655008 |
T |
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