View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13432_low_3 (Length: 549)

Name: NF13432_low_3
Description: NF13432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13432_low_3
NF13432_low_3
[»] chr1 (13 HSPs)
chr1 (6-533)||(47712866-47713393)
chr1 (27-533)||(47759802-47760308)
chr1 (21-533)||(47717684-47718187)
chr1 (27-533)||(47745479-47745976)
chr1 (355-530)||(6521630-6521811)
chr1 (394-441)||(6523721-6523768)
chr1 (27-79)||(47704889-47704941)
chr1 (476-531)||(6507051-6507106)
chr1 (357-441)||(47778037-47778127)
chr1 (481-531)||(6512957-6513007)
chr1 (489-531)||(6517364-6517406)
chr1 (139-180)||(47811738-47811779)
chr1 (139-179)||(6521987-6522027)
[»] chr5 (5 HSPs)
chr5 (402-523)||(28856511-28856632)
chr5 (399-523)||(28861785-28861909)
chr5 (355-523)||(28831268-28831436)
chr5 (355-428)||(28875835-28875908)
chr5 (27-72)||(28830931-28830976)
[»] scaffold0341 (2 HSPs)
scaffold0341 (476-531)||(1076-1131)
scaffold0341 (476-531)||(8730-8785)


Alignment Details
Target: chr1 (Bit Score: 504; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 6 - 533
Target Start/End: Original strand, 47712866 - 47713393
Alignment:
6 aggagcagagaagcgatagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatata 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47712866 aggatcagagaagcgatagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatata 47712965  T
106 gcaaactctaaacaatcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47712966 gcaaactctaaacaatcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcat 47713065  T
206 tatccgcagcaaacttaagacgagaatcacttgatgcagctatttcttttagtttcctcatcaagtttccaagaactcgattaaatagatccacctcggt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||    
47713066 tatccgcagcaaacttaagacgagaatcacttgatgcagctatttctctcagtttcctcatcaagtttccaagaactcgattaaatggatccacctcggt 47713165  T
306 tacattgttcgggtttgacatataaaactttggtgaccattcaagaatgccaaatattgatcggtttgagtaacgcaacatgtagtcctcataccaacca 405  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
47713166 tacattgttcgggttcgacatataaaactttggtgaccattcaagaatgccaaatattgattggtttgagtaacgcaacatgtagtcctcataccaacca 47713265  T
406 attgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctgcagagtc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47713266 attgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctgcagagtc 47713365  T
506 caatggcgtttactttgtcggtgttttg 533  Q
    ||||||||||||||||||||||||||||    
47713366 caatggcgtttactttgtcggtgttttg 47713393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 27 - 533
Target Start/End: Original strand, 47759802 - 47760308
Alignment:
27 ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatcattg 126  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||||||||||| |||  || ||||||| ||||| ||||||   |||||||||| ||||    
47759802 ttcatatctgatattacaacttggtttgagaactctaccaccaatcttgttattacaacaacttggaatatctgagatagcaccatctaaacaattattg 47759901  T
127 caatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaacttaagac 226  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| ||| |||    
47759902 caatcttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaaaattcaaatttacatcagttgcattatctgtagcaaatttacgac 47760001  T
227 gagaatcacttgatgcagctatttcttttagtttcctcatcaagtttccaagaactcgattaaatagatccacctcggttacattgttcgggtttgacat 326  Q
    |||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||| | |||||| |||||||||| |||||||| |    |||  ||||    
47760002 gagaatcacttgatgcagctttctctttcagtttcctcatcaagttcccaagaacttggttaaattgatccacctctgttacattatatatgttccacat 47760101  T
327 ataaaactttggtgaccattcaagaatgccaaatattgatcggtttgagtaacgcaacatgtagtcctcataccaaccaattgcttctttttggtttgga 426  Q
    ||||||||||||||| | ||| | || ||| |||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||    
47760102 ataaaactttggtgaaccttccataacgccgaatattgatcggtttgagtaacgcaacatgcagttatcataccaaccaattgcttctttttggtttgga 47760201  T
427 caaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcgg 526  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |    
47760202 caaagttttgtgagaagaactcttgaatcgttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtcag 47760301  T
527 tgttttg 533  Q
    |||||||    
47760302 tgttttg 47760308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 533
Target Start/End: Original strand, 47717684 - 47718187
Alignment:
21 atagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaa 120  Q
    ||||| ||||| ||||||||| ||||||||||||| |||| |||  |||| |||||||| | | ||||| ||||||||||| ||||||  ||||||||||    
47717684 atagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctgaaatagcacgctctaaacaa 47717783  T
121 tcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaact 220  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||| ||||||||||         ||||||||| | | ||||||||    
47717784 tcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaa---------gttgcattagcggtagcaaact 47717874  T
221 taagacgagaatcacttgatgcagctatttcttttagtttcctcatcaagtttccaagaactcgattaaatagatccacctcggttacattgttcgggtt 320  Q
    || ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||| |||| |||  | |    
47717875 tacgacgagaatcacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcatttttcaaggt 47717974  T
321 tgacatataaaactttggtgaccattcaagaatgccaaatattgatcggtttgagtaacgcaacatgtagtcctcataccaaccaattgcttctttttgg 420  Q
      || |  || |    |||||   ||| | || ||| |||||||||||||||||||||||||||||| ||||  ||||||||||||| ||||||||||||    
47717975 ccactttaaatatgaaggtgaagcttccataacgccgaatattgatcggtttgagtaacgcaacatgcagtcaacataccaaccaatcgcttctttttgg 47718074  T
421 tttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctgcagagtccaatggcgtttactt 520  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||| |||| |||||||||||    
47718075 tttggacaaagttttgtgagaagaactcttgaatcattgagacaacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactt 47718174  T
521 tgtcggtgttttg 533  Q
    |||| ||||||||    
47718175 tgtcagtgttttg 47718187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 27 - 533
Target Start/End: Original strand, 47745479 - 47745976
Alignment:
27 ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatcattg 126  Q
    |||||||||||||||||||||| |||||| |||||||| |||||||||||||||| |  || ||||| ||||||| ||||||  ||||||||||||||||    
47745479 ttcatatctaatattacaacttagtttgagaactctaccaccaatcttgttataaaaaaaacttggagtttctgaaatagcacgctctaaacaatcattg 47745578  T
127 caatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaacttaagac 226  Q
    ||||||||  ||||||| |||||||||||||||||||||||||||||||||| ||||||||||         ||||||||| | | |||||||||| |||    
47745579 caatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaaa---------gttgcattagcggtagcaaacttacgac 47745669  T
227 gagaatcacttgatgcagctatttcttttagtttcctcatcaagtttccaagaactcgattaaatagatccacctcggttacattgttcgggtttgacat 326  Q
    ||||||||| ||||||||||||||| || ||||||||||||||||| ||||||||| |||||||| || |||| |||||||||||  |   |||  || |    
47745670 gagaatcacctgatgcagctatttcattgagtttcctcatcaagttcccaagaacttgattaaattgagccacatcggttacatttctattgttccactt 47745769  T
327 ataaaactttggtgaccattcaagaatgccaaatattgatcggtttgagtaacgcaacatgtagtcctcataccaaccaattgcttctttttggtttgga 426  Q
    |||| |      |||    || | ||||||||||||||||||||||||||||||||||||| |||  |||||||||| |||||||||||||||| |||||    
47745770 ataatatgaaaatgaagtatccataatgccaaatattgatcggtttgagtaacgcaacatgcagttatcataccaactaattgcttctttttgggttgga 47745869  T
427 caaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcgg 526  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||  || ||||||||||||||||||||||||||||||||||||||||| || |    
47745870 caaagttttgtgagaagaactcttgaatcgttgagacaactgcggcaaaggtcgggtttaacatctcctctgcagagtccaatggcgtttactttatcag 47745969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 355 - 530
Target Start/End: Complemental strand, 6521811 - 6521630
Alignment:
355 ccaaatattgatcggtttgagtaacgcaacatgtagtcctcat------accaaccaattgcttctttttggtttggacaaagttttgtgagaagaactc 448  Q
    ||||||||||| ||||||||||||||||||||| | || ||||      |||| ||||||||||||||| ||||| ||||| ||| ||| ||||||||      
6521811 ccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacag 6521712  T
449 ttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgtt 530  Q
    ||||||  ||||| | | |  | ||| |||   |||| ||||||||||| || |||||||| |||||||||||||| |||||    
6521711 ttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgtt 6521630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 441
Target Start/End: Complemental strand, 6523768 - 6523721
Alignment:
394 tcataccaaccaattgcttctttttggtttggacaaagttttgtgaga 441  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||    
6523768 tcataccaaccaattgcttctttttggtttggacaaagctgtgtgaga 6523721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 47704889 - 47704941
Alignment:
27 ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttat 79  Q
    ||||||||||||||| ||||||||||||| |||||| | ||||||||||||||    
47704889 ttcatatctaatattgcaacttggtttgataactcttccaccaatcttgttat 47704941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 476 - 531
Target Start/End: Original strand, 6507051 - 6507106
Alignment:
476 catcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttt 531  Q
    |||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||    
6507051 catcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgttt 6507106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 441
Target Start/End: Complemental strand, 47778127 - 47778037
Alignment:
357 aaatattgatcggtttgagtaacgcaacatgtagt------cctcataccaaccaattgcttctttttggtttggacaaagttttgtgaga 441  Q
    ||||||||| |||| |||||||||||||||| | |      |||| ||||||||||||||||| |||| |||||||||||||| |||||||    
47778127 aaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttcctttttgtttggacaaagttgtgtgaga 47778037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 531
Target Start/End: Original strand, 6512957 - 6513007
Alignment:
481 ggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttt 531  Q
    ||||| ||||||||||| || |||||||| |||||||||||||||||||||    
6512957 ggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgttt 6513007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 531
Target Start/End: Original strand, 6517364 - 6517406
Alignment:
489 atctcctctgcagagtccaatggcgtttactttgtcggtgttt 531  Q
    |||||||||||| |||||||| ||||||||||||||| |||||    
6517364 atctcctctgcatagtccaattgcgtttactttgtcgctgttt 6517406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 47811779 - 47811738
Alignment:
139 gacaaatcaggtgtacactgcacaagaccatatatggtttga 180  Q
    |||||||||||||||||||| |||||||||| ||| ||||||    
47811779 gacaaatcaggtgtacactgaacaagaccatttattgtttga 47811738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 6522027 - 6521987
Alignment:
139 gacaaatcaggtgtacactgcacaagaccatatatggtttg 179  Q
    |||||||||||||| || || ||||||||||||||||||||    
6522027 gacaaatcaggtgtgcattgaacaagaccatatatggtttg 6521987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 402 - 523
Target Start/End: Original strand, 28856511 - 28856632
Alignment:
402 accaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctgcag 501  Q
    ||||||||||||||||| ||||||||||  || ||| ||||||||||||||||  || |||| |||||||||| |||  || |||||||||||||||||     
28856511 accaattgcttcttttttgtttggacaattttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcat 28856610  T
502 agtccaatggcgtttactttgt 523  Q
    | ||| ||||||| ||||||||    
28856611 aatcctatggcgtatactttgt 28856632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 399 - 523
Target Start/End: Original strand, 28861785 - 28861909
Alignment:
399 ccaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctg 498  Q
    |||||||||||||||||||||||| |||||   || ||| ||||||||||||||||  || |||| |||||||||| |||  || |||||||||||||||    
28861785 ccaaccaattgcttctttttggttaggacatttttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctg 28861884  T
499 cagagtccaatggcgtttactttgt 523  Q
    || | ||| ||||||| ||||||||    
28861885 cataatcctatggcgtatactttgt 28861909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 523
Target Start/End: Original strand, 28831268 - 28831436
Alignment:
355 ccaaatattgatcggtttgagtaacgcaacatgtagtcctcataccaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaat 454  Q
    |||||||| || || || ||||||||||||||| | |  |||  ||||  |||||||||||||||||||||||||  || ||| ||||||||||||||||    
28831268 ccaaatatggaccgattggagtaacgcaacatgcaattgtcagtccaaataattgcttctttttggtttggacaattttgtgttagaagaactcttgaat 28831367  T
455 cattgagacgactgcggcaaacatcaggtttaacatctcctctgcagagtccaatggcgtttactttgt 523  Q
      || |||  || ||||||| |||  || |||||||||||||| || | ||| ||||||| ||||||||    
28831368 tgttaagataacggcggcaatcatttggattaacatctcctctacataatcctatggcgtatactttgt 28831436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 428
Target Start/End: Original strand, 28875835 - 28875908
Alignment:
355 ccaaatattgatcggtttgagtaacgcaacatgtagtcctcataccaaccaattgcttctttttggtttggaca 428  Q
    ||||||||||| ||| |||||||||||| |||| |||  |||  ||||||||||||||||||| ||| ||||||    
28875835 ccaaatattgaccggcttgagtaacgcagcatgcagttgtcaatccaaccaattgcttcttttcggtatggaca 28875908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 28830931 - 28830976
Alignment:
27 ttcatatctaatattacaacttggtttgacaactctacaaccaatc 72  Q
    ||||||||||||||||||||||||||| | |||||||  |||||||    
28830931 ttcatatctaatattacaacttggtttcataactctagcaccaatc 28830976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 476 - 531
Target Start/End: Original strand, 1076 - 1131
Alignment:
476 catcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttt 531  Q
    |||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||    
1076 catcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgttt 1131  T

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Target: scaffold0341; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 476 - 531
Target Start/End: Original strand, 8730 - 8785
Alignment:
476 catcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttt 531  Q
    |||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||    
8730 catcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgttt 8785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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