View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13433_low_4 (Length: 358)
Name: NF13433_low_4
Description: NF13433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13433_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 31 - 342
Target Start/End: Original strand, 28724884 - 28725195
Alignment:
| Q |
31 |
tcattacaaaaaattagtaggtaattttattgacgatcaagaagtgaagatgactttgtctcactggaaagaactgagaatacccctgaaaataaagcat |
130 |
Q |
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| T |
28724884 |
tcattacaaaaaattagtaggtaattttattgacgatcaagaagtgaagatgactttgtctcactggaaagaactgagaatacccctgaaaataaagtat |
28724983 |
T |
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| Q |
131 |
gagcgacaaattgctcgactccaacttgagcaaattcaaaacaccgctggctttaacgacgacatgaatgctttgcatgatttccagaagctcattgggt |
230 |
Q |
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| T |
28724984 |
gagagacaaattgctcgactccaacttgagcaaattcaaaacaccgctggctttaacgacgacatgaatgctttgcatgatttccagaagctcgttgggt |
28725083 |
T |
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| Q |
231 |
gttccatgacttatcccacatacacaaggatacaatgttttggtattgaagctaaagaaaatgaagaacgttttctttatggttcttgaaatattgagat |
330 |
Q |
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| T |
28725084 |
gttccatgacttatcccacatacacaaggatacaatgttttggtattgaagctaaccaaaatgaagaacgttttctttatggttcttgaaatattgagat |
28725183 |
T |
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| Q |
331 |
gaagtaacattt |
342 |
Q |
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| T |
28725184 |
gaagtaacattt |
28725195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 128 - 342
Target Start/End: Original strand, 28727472 - 28727682
Alignment:
| Q |
128 |
catgagcgacaaattgctcgactccaacttgagcaaattcaaaacaccgctggctttaacgacgacatgaatgctttgcatgatttccagaagctcattg |
227 |
Q |
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| T |
28727472 |
catgagagacaaatggcttgactccaactcgagcaaataaaaaacaccgctggatttaacgataacatggatgctatgtatgaattttacaacctccttg |
28727571 |
T |
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| Q |
228 |
ggtgttccatgacttatcccacataca-caaggatacaatgttttggtattgaagctaaagaaaatgaagaacgttttctttatggttcttgaaatattg |
326 |
Q |
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| T |
28727572 |
gttattctgtaacttatcccacatacaacaaggacacgatgttttggtagcgaggctaag-----ttaagaatgttttctttatggttcttgagatattg |
28727666 |
T |
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| Q |
327 |
agatgaagtaacattt |
342 |
Q |
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| T |
28727667 |
agatgaagtgacattt |
28727682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 28733846 - 28733893
Alignment:
| Q |
295 |
agaacgttttctttatggttcttgaaatattgagatgaagtaacattt |
342 |
Q |
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| T |
28733846 |
agaatgttttctttatggttcttgagatattgagatgaagtgacattt |
28733893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 36086991 - 36086955
Alignment:
| Q |
138 |
aaattgctcgactccaacttgagcaaattcaaaacac |
174 |
Q |
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| T |
36086991 |
aaatcgctcgactcaaacttgagcaaattcaaaacac |
36086955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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