View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13433_low_5 (Length: 321)

Name: NF13433_low_5
Description: NF13433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13433_low_5
NF13433_low_5
[»] chr2 (1 HSPs)
chr2 (18-314)||(42104874-42105170)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 42105170 - 42104874
Alignment:
Q  18 cagtcagctgcaattcgaaaatcacaccattcttcatagatggctgaaatggaagaaattgggtatgtatcaaaacttctattatcannnnnnnnnnatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||    
T  42105170 cagtcagctgcaattcgaaaatcacaccattcttcatagatggctgaaatggaagaaattgggtatgtatcaaaacttctattatcattttgtttttatt 42105071  T
Q  118 gtttgaaaattcaatattctgctaagaccaactaaatcggggaccatatatccatcagaaaccctaaatgttctgtctcaacacaacacatgaattgttg 217  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42105070 gtttgaaaattcaatattctgctaagaccaactaaatcagggaccatatatccatcagaaaccctaaatgttctgtctcaacacaacacatgaattgttg 42104971  T
Q  218 acaccttgcgaatgtggattaaaatgtcatatggtccttcaccaccatgtcaaccctagggtttctannnnnnngtttgtttgttgaagatcctatg 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||| ||||||    
T  42104970 acaccttgcgaatgtggattaaaatgtcatatggtccttcaccaccatgtcaaccctagggtttctatttttttgtctgtttgttgaagaacctatg 42104874  T

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