View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13434_high_12 (Length: 293)
Name: NF13434_high_12
Description: NF13434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13434_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 6284115 - 6283845
Alignment:
| Q |
16 |
caattatttaccactgcttgctttctcccttcttcctttattcaactcatcaactttttcatgttctaccgacttcttaagtattgtttcatcctctata |
115 |
Q |
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| T |
6284115 |
caatcattgaccactgcttgctttctcctttcttcctttattcaactcatcaacttcttcaagttctaccgacttcttaagtattgtttcatcctctata |
6284016 |
T |
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| Q |
116 |
ttaaaataaattttgtcattcctttgtcaacgaaaaatccctaccgcatccaactatttcctacatactctccctccacatttcctccaggtgtttctgg |
215 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
6284015 |
ttaaaataaattttgtcattcctttgtaagcgaaaaatccctactgcatccaactatttcctacctactctccctccacatttcctccaggtgtttccag |
6283916 |
T |
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| Q |
216 |
aactatagtacccccttcctctatctataatcaatggaggtgttattggaaaaacctatccttctctgctc |
286 |
Q |
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|||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
6283915 |
aactatcgtacccccttcctctatctataattaatggcggtgttattggaaaaacctatccttctctgctc |
6283845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 6305628 - 6305577
Alignment:
| Q |
33 |
ttgctttctcccttcttcctttattcaactcatcaactttttcatgttctac |
84 |
Q |
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||||||||||||||||||||||||||||| |||| ||| |||||||||||| |
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| T |
6305628 |
ttgctttctcccttcttcctttattcaacacatctgcttcttcatgttctac |
6305577 |
T |
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