View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13434_high_13 (Length: 287)
Name: NF13434_high_13
Description: NF13434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13434_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 31775688 - 31775952
Alignment:
| Q |
1 |
aaaagaaccgatcaagagttacaatccgatcatgaatgaaattcagatgtctaaagagcaattgtctatcttttgcttatacactaaccctattcatata |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31775688 |
aaaagagccgatcaagagttacaatccgatcatgaacgaaattcagatgtctaaagagcaattgtctatcttttgcgtatacactaaccctattcatata |
31775787 |
T |
|
| Q |
101 |
acctgcaagtttaagcgacccgattaaaagagattgactagcacagataccctcgtacgtagcttaggttttattctcacaa---tattataacacacac |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31775788 |
acctgcaagtttaagcgacccgattaaaagagattgactagcacggatatcctcgtacgtagcttaggttttattctcacaatattattataacacacac |
31775887 |
T |
|
| Q |
198 |
gggtaagtctgtgttcaaggttctattattggttagcacattaaattaaaataaagtaacaagtg |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31775888 |
gggtaagtctgtgttcaaggttctattattggttagcacattaaattaaaataaagtaacaagtg |
31775952 |
T |
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