View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13434_high_9 (Length: 344)
Name: NF13434_high_9
Description: NF13434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13434_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 21483265 - 21482960
Alignment:
| Q |
17 |
cataggcatcataataataaccatcatcagaatattcaaggttctgatccacttgcgagattaggtagtggtgataattgcaccaatgttgctgctggtg |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21483265 |
cataggcatcataatattaaccatcatcagaatattcaaggttctgatccacttgcgagattaggtagtggtgatagttgcaccaatgttgctgctggtg |
21483166 |
T |
|
| Q |
117 |
gttctcatgcaaatccagcgaactggatgtattggcagactatgaccggtgggacagcagcttccttggcacctgttgttccggctgagccgacgcagcc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21483165 |
gttctcatgcaaatccagcgaactggatgtattggcagactatgaccggtgggacagcagcctccttggcacctgttgttccggctgagccgacgcagcc |
21483066 |
T |
|
| Q |
217 |
tccagtggaccgtgaccgccccaccatgcagacacagagttctcaccagggtcgaagtgcatccgataggagacaggtttgtggacttaagctgtatatt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
21483065 |
tccagtggaccgtgaccgccccaccatgcagacacagagttctcaccagggtcgaagtgcatccgataggagacaggtttgtggacttcagctttatatt |
21482966 |
T |
|
| Q |
317 |
attgtt |
322 |
Q |
| |
|
|||||| |
|
|
| T |
21482965 |
attgtt |
21482960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University