View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13434_low_1 (Length: 670)

Name: NF13434_low_1
Description: NF13434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13434_low_1
NF13434_low_1
[»] chr4 (1 HSPs)
chr4 (19-670)||(45284518-45285169)


Alignment Details
Target: chr4 (Bit Score: 640; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 19 - 670
Target Start/End: Complemental strand, 45285169 - 45284518
Alignment:
Q  19 ctttggtcctgtgtaactcacttgtgagtgattcattgttaatattcaattcatttatctcctcctttgcacttgtaagttcattttttaactgatttaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45285169 ctttggtcctgtgtaactcacttgtgagtgattcattgttaatattcaattcatttatctcctcctttgcacttgtaagttcattttttaactgatttaa 45285070  T
Q  119 ttccatttctaatctatcaatgcaagaagattgatccatgatatatctttccttttgttcaatgtcattgtataagtcctttatggcattagaaggagaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45285069 ttccatttctaatctatcaatgcaagaagattgatccatgatatatctttccttttgttcaatgtcattgtataagtcctttatggcattagaaggagaa 45284970  T
Q  219 tcctcagataaagtgagtgtttcatcaaccatttgtttattttgcaatccatgcagcatatctatattctttctcatatctaccatctcttgttgcgctt 318  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45284969 tcctcggataaagtgagtgtttcatcaaccatttgtttattttgcaatccatgcagcatatctatattctttctcatatctactatctcttgttgcgctt 45284870  T
Q  319 gatcattatcttttgtagctaattgaatttcctcgtctttctgatacaacattccaatattctgtttctcaactttaatagcagcaagttttgacctgtg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45284869 gatcattatcttttgtagctaattgaatttcctcgtctttctgatacaacattccaatattctgtttctcaactttaatagcagcaagttttgacctgtg 45284770  T
Q  419 aacacgttcattaagctcatttacttgatgcagaagttcttctttctgttccttttccatcttcaactcattttccaactgttccgccttagtgacagca 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45284769 aacacgttcattaagctcatttacttgatgcagaagttcttctttctgttccttttccatcttcaactcattttccaactgttccgccttagtgacagca 45284670  T
Q  519 ttcaattctgaatctctagcagcaaaaatatcagtatctttgttcagaagctctctttgtgtggccttcaattcactcaaaacatgtgaaagttggtccc 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45284669 ttcaattctgaatctctagcagcaaaaatatcagtatctttgttcagaagctctctttgtgtggacttcaattcactcaaaacatgtgaaagttggtccc 45284570  T
Q  619 gaacttttacagtttctaatctaagatcagccatctctttcatcattgattc 670  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45284569 gaacttttacagtttctaatctaagatcagccatctctttcatcattgattc 45284518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University