View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13434_low_11 (Length: 310)
Name: NF13434_low_11
Description: NF13434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13434_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 38728523 - 38728822
Alignment:
| Q |
1 |
cagagattgaattaggattggtgtgaaggagaagatattcaaggtcacctttatcaccattgggaccaatatttttgcagccataaccaaaaggagtaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38728523 |
cagagattgaattaggattggtgtgaaggagaagatactcaaggtcacctttatcaccattgggaccaatatttttgcagccataaccaaaaggagtaga |
38728622 |
T |
|
| Q |
101 |
agtaccagcttgaagtttctctgaagagttttttgagaaaaactctgttccttcattttccaaccttgaaataacctcctttggtataccatgattcacc |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38728623 |
agtaccagcttgaagtttctctgtagagttttttgagaaaaactctgttccttcattttccaaccttgaaataacctcctttggtataccatgattcacc |
38728722 |
T |
|
| Q |
201 |
accttnnnnnnnccatattcttcgcaagctttcacaactaattccgacaactctgaccgttccatggaaaggtcaattgtcggaattcccacagcctttg |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38728723 |
accttaaaaaaaccatattcttcgcaagctttcacaactaattccgacaactctgacctttccatggaaaggtcaattgtcggaattcccacggcctttg |
38728822 |
T |
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