View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13434_low_15 (Length: 276)
Name: NF13434_low_15
Description: NF13434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13434_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 52624121 - 52623876
Alignment:
| Q |
18 |
gttttgacctagcttttgagctttgtccaaaaggagaacctatgaacgtacacaacaacaacaagggtgaaagaatcaatttggagagacaccaattgta |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
52624121 |
gttttgacctagcttttgagctttgttcaaaaggagaacctatgaacgtacacaacaacaacaagggtgaaagaatcaatttggagagacaccaatatta |
52624022 |
T |
|
| Q |
118 |
tcaaaatgtaacgtgtagcactgattctgataacaacaataataacaacgatcgtagaaagaaactgaggctaacaaaggagcaatcatccatgcttgag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52624021 |
tcaaaatgtaacgtgtagcactgattctgataacaaca---ataacaacgatcgtagaaagaaactgaggctaacaaaggagcaatcatccatgcttgag |
52623925 |
T |
|
| Q |
218 |
accaccttcaagctccataacactcttaatccggtatccattcattcat |
266 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52623924 |
agcaccttcaagctccataacactcttaatccggtatccattcattcat |
52623876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 40039433 - 40039619
Alignment:
| Q |
18 |
gttttgacctagcttttgagctttgtccaaaaggagaacctatgaacgtacacaacaacaacaagggtgaaagaatcaatttggagagacaccaattgta |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| || |
|
|
| T |
40039433 |
gtttagacctagcttttgagctttgtccaaaagaagaagctatgaacgtacacaacaacaagaagggtgaaagattcaatttggagagacaccaacatta |
40039532 |
T |
|
| Q |
118 |
tcaaaatgtaacgtgtagcactgattctgataacaacaataataacaacgatcgtagaaagaaactgaggctaacaaaggagcaatcatc |
207 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40039533 |
tcaaaatgtaaagtgtagccctgattctgataacaac---aacaacaacgatcgtagaaaaaaactgaggctaacaaaggagcaatcatc |
40039619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University