View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13434_low_16 (Length: 274)
Name: NF13434_low_16
Description: NF13434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13434_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 17087094 - 17087207
Alignment:
| Q |
86 |
aacaccgatcatctaaatatttactcaccagcatcacccctcaagtcaatcaaacctccacactgatagctacgcatctctcacttaactgcaccatttt |
185 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| ||||| ||| |||||||||||||||| |||||||||| |
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| T |
17087094 |
aacatcgatcatctaaatatgtactcaccagcatcacccctcaagtcaatccaagctccacattgataactaagcatctctcacttaaccgcaccatttt |
17087193 |
T |
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| Q |
186 |
ggttattttagtat |
199 |
Q |
| |
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|||||||||||||| |
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| T |
17087194 |
ggttattttagtat |
17087207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 17084667 - 17084739
Alignment:
| Q |
19 |
tcaccaacctttt-ctcattcttgaattcaactattgacaattttcttggactgtacattgccaaattaacac |
90 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
17084667 |
tcaccaacctttttctcattcttgaattcaactattgacaattttcatggactgtacattaccaaattaacac |
17084739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 262
Target Start/End: Original strand, 17087240 - 17087272
Alignment:
| Q |
230 |
gtgaggtatatttcatagatagtttaatatatt |
262 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
17087240 |
gtgaggtatatttcatagatagtttaatatatt |
17087272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 17001945 - 17001980
Alignment:
| Q |
164 |
tctcacttaactgcaccattttggttattttagtat |
199 |
Q |
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| T |
17001945 |
tctcacttaaccgcaccattttggttattttagtat |
17001980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 8549916 - 8550043
Alignment:
| Q |
26 |
ccttttctcattcttgaattcaactattgacaattttcttggactgtacattgccaaattaacaccgatcatctaaatatttactcaccagcatcacccc |
125 |
Q |
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|||||||||||||||| ||||||||||| | ||||||||||||| |||||| | | ||||| | ||| ||||||||| |||||| |||||||||||||| |
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| T |
8549916 |
ccttttctcattcttgtgttcaactattggccattttcttggactttacattacaagattaatatcgaccatctaaatctttactgaccagcatcacccc |
8550015 |
T |
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| Q |
126 |
tcaagtcaatcaaacctccacactgata |
153 |
Q |
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|||| |||||| |||||||||||||||| |
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| T |
8550016 |
tcaattcaatccaacctccacactgata |
8550043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 8538076 - 8537949
Alignment:
| Q |
26 |
ccttttctcattcttgaattcaactattgacaattttcttggactgtacattgccaaattaacaccgatcatctaaatatttactcaccagcatcacccc |
125 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||| ||||| | | ||||| | ||| ||||||||| ||||||| ||| ||||||||| |
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| T |
8538076 |
ccttttctcattcttgtgttcaactattgacaactttcttggacttaacattacaagattaatatcgaccatctaaatgtttactccccaacatcacccc |
8537977 |
T |
|
| Q |
126 |
tcaagtcaatcaaacctccacactgata |
153 |
Q |
| |
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|||| |||||| |||||||||||||||| |
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|
| T |
8537976 |
tcaattcaatccaacctccacactgata |
8537949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 38701234 - 38701349
Alignment:
| Q |
32 |
ctcattcttgaattcaactattgacaattttcttggactgtacattgccaaattaacaccgatcatctaaatatttactcaccagcatcacccctcaagt |
131 |
Q |
| |
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|||||||||| ||| |||||| ||||||| ||||||| |||||| ||||||||||| |||||||||| || ||||||||||||||||||||||||| | |
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| T |
38701234 |
ctcattcttgtgctcatctattgtcaatttttttggactttacattaccaaattaacatcgatcatctagatgtttactcaccagcatcacccctcaatt |
38701333 |
T |
|
| Q |
132 |
caatcaaacctccaca |
147 |
Q |
| |
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|| || |||| ||||| |
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| T |
38701334 |
cactccaaccaccaca |
38701349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 54385399 - 54385525
Alignment:
| Q |
27 |
cttttctcattcttgaattcaactattgacaattttcttggactgtacattgccaaattaacaccgatcatctaaatatttactcaccagcatcacccct |
126 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||| ||||||| |||||| ||||||||||| |||| |||| || |||||||||||||||||||||| |
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| T |
54385399 |
cttttctcattcttgtgctcagctattggcaatttctttggactttacattaccaaattaacatcgattctctagatgtttactcaccagcatcacccct |
54385498 |
T |
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| Q |
127 |
caagtcaatcaaacctccacactgata |
153 |
Q |
| |
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| | ||| || |||| ||||||||||| |
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| T |
54385499 |
ccattcactccaaccaccacactgata |
54385525 |
T |
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