View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13434_low_2 (Length: 617)
Name: NF13434_low_2
Description: NF13434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13434_low_2 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: scaffold0021 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 17 - 604
Target Start/End: Original strand, 149934 - 150523
Alignment:
| Q |
17 |
aattagtgtatgtactataggtgtcaatttgcaaagagtctaaaagacataaaccatannnnnnnnnnnnnnnnnnnncctaaattacagatttgatcga |
116 |
Q |
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| T |
149934 |
aattagtgtatgtactataggtgtcaatttgcaaaaagtctaaaagacataaaccatattttctttttaagttttcttcctaaattacagatttgatcga |
150033 |
T |
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| Q |
117 |
aaagatttgtattaacacccacatt--atagttttctgtttcttcatctatgtgaaatttgtccgagagagaggaaagacttgtctcacacataatgtgt |
214 |
Q |
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| T |
150034 |
aaagatttgtattaacacccacattttatagttttctgtttcttcatctatgtgaaatttgtccgagagagaggaaagacttgtctcacacataatgtgt |
150133 |
T |
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| Q |
215 |
tgttgagaaataatttccaatctatattttgtttgttgaaatttgaattgaaaatgcaagatccaaaccaagtttttattccttgttattggcttccaca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150134 |
tgttgagaaataatttccaatctatattttgtttgttgaaatttgaattgaaaatgcaagatccaaaccaagtttttattccttgttattggcttccaca |
150233 |
T |
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| Q |
315 |
accataacattattattatgtttcgttgaccagttttctagaacgtgtctgcatcattcataatcttcttcatcaccctctttttctttcattattactt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150234 |
accataacattattattatgtttcgttgaccagttttctagaacgtgtctgcatcattcataatcttcttcatcaccctctttttctttcattattactt |
150333 |
T |
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| Q |
415 |
atcaaggctttacaagtttctgcgaccgagcttttaaggccgtatttgtttgaaacaaatttggattatatggtggatataagaaggtgaaaaatgaaga |
514 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
150334 |
atcaaggctttacaagtttctgcgaccgagctgttaaggccgtatttgtttgaaacaaatttggattatatggtggatataggaaggtgaaaaatgaaga |
150433 |
T |
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| Q |
515 |
ccaagttacatctaagcaagatctattcgttcgcatgttggagaccatcgtttaatagagagcattcgcatattggagagcgtggatatt |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150434 |
ccaagttacatctaagcaagatctattcgttcgcatgttggagaccatcgtttaatagagagcattcgcatattggagagcgtggatatt |
150523 |
T |
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