View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13434_low_3 (Length: 586)
Name: NF13434_low_3
Description: NF13434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13434_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 13608492 - 13608867
Alignment:
| Q |
18 |
aaaaattgctgaatactttgaagtatcaggacaaactgttctacctattttctatgatgtgagtccatctgcggtacgaaagcaaagcggagattatgaa |
117 |
Q |
| |
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| T |
13608492 |
aaaaattgctgaatactttgaagtatcaggacaaactgttctacctattttctatgatgcgagtccatctgcggtacgaaagcaaagcggagattatgaa |
13608591 |
T |
|
| Q |
118 |
aaagcctttcaaaagcatgaagaaagattcaaagaaaacttagaggaagtgcaaagatggaggggagccctaacacaagtagccaatctctctggttggg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608592 |
aaagcctttcaaaagcatgaagaaagattcaaagaaaacttagaggaagtgcaaagatggaggggagccctaacacaagtagccaatctctctggttggg |
13608691 |
T |
|
| Q |
218 |
atatgaaggataagtaagtagtattttctctgtttgccacaagctgatcaacacttttaagtttactaacaaaactttacctgtttcattgaacgaataa |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608692 |
atatgaaggataagtaagtagtattttctctgtttgccacaagctgatcaacacttttaagtttactaacaaaactttacctgtttcattgaacgaataa |
13608791 |
T |
|
| Q |
318 |
ttttcaaggatttgactgaatttttcaattaattacagtagcactttgtcattatatttgatgtttactgtcatga |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608792 |
ttttcaaggatttgactgaatttttcaattaattacagtagcactttgtcattatatttgatgtttactgtcatga |
13608867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 451 - 573
Target Start/End: Original strand, 13608925 - 13609047
Alignment:
| Q |
451 |
catgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaacaaa |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608925 |
catgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaacaaa |
13609024 |
T |
|
| Q |
551 |
acttcaactttacctggcaatat |
573 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
13609025 |
acttcaactttacctggcaatat |
13609047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 45 - 282
Target Start/End: Complemental strand, 6473129 - 6472890
Alignment:
| Q |
45 |
aggacaaactgttctacctattttctatgatgtgagtccatctgcggtacgaaagcaaagcggagattatgaaaaagcctttcaaaagcatgaagaaaga |
144 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| |||||| |||||| ||||||| |
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| T |
6473129 |
aggacaaactgttctacctattttctatgatgtgagtccatctgaggtacgaaaacaaaccggagattatgaaaaaccctttcttgagcatggagaaaga |
6473030 |
T |
|
| Q |
145 |
ttcaaagaaaacttagaggaagtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggatatgaaggataagtaagtagtatttt |
244 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6473029 |
ttcaaaggaaacttagaggcagtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggatataaaggataagtaagtagtatttt |
6472930 |
T |
|
| Q |
245 |
ctctgtttgccacaag--ctgatcaacacttttaagttta |
282 |
Q |
| |
|
|| |||||||| |||| ||||||||||||||||||||| |
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| T |
6472929 |
ctatgtttgccgcaagttgtgatcaacacttttaagttta |
6472890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 451 - 567
Target Start/End: Complemental strand, 6472799 - 6472683
Alignment:
| Q |
451 |
catgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaacaaa |
550 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| || ||||||| ||||||| |||||||||||||||| ||| | ||||||||||||| || |
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| T |
6472799 |
catgtgatgatttggaatttctattctctggtcttttaggtcacaatatgcggagattgaaaaaattattaaaaaggtaagaagcttattgggaaataag |
6472700 |
T |
|
| Q |
551 |
acttcaactttacctgg |
567 |
Q |
| |
|
||| ||||||| |||| |
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| T |
6472699 |
actgaaactttaactgg |
6472683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 1e-67; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 31244475 - 31244713
Alignment:
| Q |
22 |
attgctgaatactttgaagtatcaggacaaactgttctacctattttctatgatgtgagtccatctgcggtacgaaagcaaagcggagattatgaaaaag |
121 |
Q |
| |
|
|||||||||| | |||||||| ||||||||| ||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| |
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| T |
31244475 |
attgctgaatgcattgaagtaacaggacaaattgttctacctattttctatgatgtggatccatctgaggtgcgaaagcaaagcggagattatgaaaaag |
31244574 |
T |
|
| Q |
122 |
cctttcaaaagcatgaagaaagattcaaagaaaacttagaggaagtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggatat |
221 |
Q |
| |
|
||||| | ||||||||||||||||||| ||| |||||| |||||||||||||||| ||||||||| ||||||||||| | ||||||||||||||| | |
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|
| T |
31244575 |
cctttagggatcatgaagaaagattcaaaggaaatttagagaaagtgcaaagatggagaggagccctagcacaagtagccgaactctctggttgggatgt |
31244674 |
T |
|
| Q |
222 |
gaaggataagtaagtagtattttctctgtttgccacaag |
260 |
Q |
| |
|
| |||| |||||||||| |||||| ||||||| ||||| |
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| T |
31244675 |
aagggatcagtaagtagtcttttctatgtttgcaacaag |
31244713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 453 - 565
Target Start/End: Original strand, 31244876 - 31244988
Alignment:
| Q |
453 |
tgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaacaaaac |
552 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || |||||||||||||| | ||||| | |
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| T |
31244876 |
tgtgatgatttggtatttctatcctctggtcttttaggccacaatatgcagagattggaaaaattattaaagaggtaacatgcttattgagtcacaaatc |
31244975 |
T |
|
| Q |
553 |
ttcaactttacct |
565 |
Q |
| |
|
||||||||||||| |
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|
| T |
31244976 |
ttcaactttacct |
31244988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 31150922 - 31150836
Alignment:
| Q |
133 |
catgaagaaagattcaaagaaaacttagaggaagtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggat |
219 |
Q |
| |
|
||||||||||||||| || ||||||| || |||||||||||||||| ||| || |||||||| |||||||||||||| |||||| |
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|
| T |
31150922 |
catgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggat |
31150836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 31159784 - 31159718
Alignment:
| Q |
169 |
caaagatggaggggagccctaacacaagtagccaatctctctggttgggatatgaaggataagtaag |
235 |
Q |
| |
|
||||||||||||| | ||||||||||| |||||||||||||||||||||||| | ||||||||| |
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| T |
31159784 |
caaagatggagggcaagtctaacacaagtcgccaatctctctggttgggatatgcatcataagtaag |
31159718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 31496522 - 31496575
Alignment:
| Q |
166 |
gtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggat |
219 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||| || ||||||||||||||||| |
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|
| T |
31496522 |
gtgcaaagatggagggaagctctaatacaagtcgctgatctctctggttgggat |
31496575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 35 - 282
Target Start/End: Original strand, 14723997 - 14724250
Alignment:
| Q |
35 |
ttgaagtatcaggacaaactgttctacctattttctatgatgtgagtccatctgcggtacgaaagcaaagcggagattatgaaaaagcctttcaaaagc- |
133 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||| ||| |||| ||||||||||||| ||||| |||| |
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|
| T |
14723997 |
ttgaagtatcaggacaaattgttctacctattttctatgacgggagtccatctgaggtacgaaagaaaaacggaaattatgaaaaagcttttcagaagca |
14724096 |
T |
|
| Q |
134 |
-------atgaagaaagattcaaagaaaacttagaggaagtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggatatgaagg |
226 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| |||||| ||||||||||||| || ||||||||||||| || |||| ||| |||| |||| |
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|
| T |
14724097 |
tgaatcaatgaagcaagattcaaagaaaatttagaggatttgcaaatatggaggggagccttagcacaagtagccaa--tccctggctggaatataaagg |
14724194 |
T |
|
| Q |
227 |
ataagtaagtagtattttctctgtttgccacaagctgatcaacacttttaagttta |
282 |
Q |
| |
|
|| ||||||| ||||||||| |||| || ||||| | |||||| |||||||||||| |
|
|
| T |
14724195 |
atcagtaagttgtattttctatgttagcaacaagataatcaacgcttttaagttta |
14724250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 35 - 282
Target Start/End: Complemental strand, 17599853 - 17599600
Alignment:
| Q |
35 |
ttgaagtatcaggacaaactgttctacctattttctatgatgtgagtccatctgcggtacgaaagcaaagcggagattatgaaaaagcctttcaaaagc- |
133 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||| ||| |||| ||||||||||||| ||||| |||| |
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|
| T |
17599853 |
ttgaactatcaggacaaactgttctacctattttctatgacgggagtccatctgaggtacgaaagaaaaacggaaattatgaaaaagcttttcagaagca |
17599754 |
T |
|
| Q |
134 |
-------atgaagaaagattcaaagaaaacttagaggaagtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggatatgaagg |
226 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| |||||| ||||||||| ||| |||| ||||||||||| || |||| ||| |||| |||| |
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|
| T |
17599753 |
tgaatcaatgaagcaagattcaaagaaaatttagaggatttgcaaatatggaggggtgccttaactcaagtagccaa--tccctggctggaatataaagg |
17599656 |
T |
|
| Q |
227 |
ataagtaagtagtattttctctgtttgccacaagctgatcaacacttttaagttta |
282 |
Q |
| |
|
|| ||||||| ||||||||| |||| || ||||| | ||||||||||||||||||| |
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|
| T |
17599655 |
atcagtaagttgtattttctatgttagcaacaagataatcaacacttttaagttta |
17599600 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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