View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13434_low_4 (Length: 565)
Name: NF13434_low_4
Description: NF13434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13434_low_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 165 - 565
Target Start/End: Original strand, 3632194 - 3632594
Alignment:
| Q |
165 |
gttattgtatgagtggtaatatgattagtctcacatttttaaattctatttagtctttagtcaatgtaatctgtttttacatggatatagtacaataatg |
264 |
Q |
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| T |
3632194 |
gttattgtatgagtggtaatatgattagtctcacatttttaaattctatttagtctttagtcaatgtaatctgtttttacatggatatagtacaataatg |
3632293 |
T |
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| Q |
265 |
ctaatggttcgcaaatggtacagtactacttatttttgcttcatattgaaaatcattctctgtttgtatttaattcaatttgattttcacccgttacatt |
364 |
Q |
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| T |
3632294 |
ctaatggtttgcaaatggtacagtactacttatttttgcttcatattgaaaatcattctctgtttgtatttaattcaatttgattttcacccgttacatt |
3632393 |
T |
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| Q |
365 |
ttagtttatcattcaattctgatagtcccttgtgattgttatattagttacattttttgctgacaccttctcttctttgaaacgaacaaggatttggcac |
464 |
Q |
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| T |
3632394 |
ttagtttatcattcaattctgatagtcccttgtgattgttatattagttacattttttgctgacaccttctcttctttgaaacgaacaaggatttggcac |
3632493 |
T |
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| Q |
465 |
cttctccaaaatatggtattgatgtcaaagacgtcgatgtattatcaagggaagaaggtggttacaggagttgccatttattcttatctggaagtgatag |
564 |
Q |
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| T |
3632494 |
cttctccaaaatatggtattgatgtcaaagacgtcgatgtattatcaagggaagaaggtggatacaggagttgccatttattcttatctggaagtgatag |
3632593 |
T |
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| Q |
565 |
t |
565 |
Q |
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| T |
3632594 |
t |
3632594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 3632030 - 3632136
Alignment:
| Q |
1 |
tttatttctataactatgttgaagaaggaagtgagacagggttgcccaatgaaggatgaacctttggtttgtttccgagttttgtttgattctaaagcta |
100 |
Q |
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| T |
3632030 |
tttatttctataactatgttgaagaaggaagtgagacagggttgcccaatgaaggatgaacctttggtttgttttcgagttttgtttgattctaaagcta |
3632129 |
T |
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| Q |
101 |
ctgtcct |
107 |
Q |
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| T |
3632130 |
ctgtcct |
3632136 |
T |
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