View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13434_low_5 (Length: 556)
Name: NF13434_low_5
Description: NF13434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13434_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 33368487 - 33368172
Alignment:
| Q |
18 |
aaatcttacactatttcagcatttatttgttttgtaagtctctgtgcatacgattagatactcaaatacaaa-gaagcattattcaaaaatgcatgtact |
116 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
33368487 |
aaatctcacactatttcaccatttatttgttttgtaagtctatgtgcatacgatcagatactcaaatacaaaagaagcattattcaaaaatacatgtact |
33368388 |
T |
|
| Q |
117 |
tatctcattcttgatagagtgataatactatttgttctctctattccccaaaaagaaaaatgaagaacaattcaaatccaaaactcatactcctccaccc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33368387 |
tatctcattcttgatagagtgataatactatttgttctctctattccccaaaaagaaaaatgaagaacaattcaaatccaaaactcatactcctacaccc |
33368288 |
T |
|
| Q |
217 |
ttctcctcatcacaagcaatcatcaacaacagtaccctttctctctaaccatctttttatcttcatcatcactttcttcactatagtcttcactcttact |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33368287 |
ttctcctcatcacaagcaatcatcaacaacagtaccctttctctctaaccatctttttatcttcatcatcactttcttcactatagtcttcactcttact |
33368188 |
T |
|
| Q |
317 |
ctaatcacaaccatga |
332 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33368187 |
ctaatcacaaccatga |
33368172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 390 - 540
Target Start/End: Complemental strand, 33368114 - 33367964
Alignment:
| Q |
390 |
taactaaagctctggttcactacgcctcctcctcgaactccaccaccaaatccatgtccttttcagaaatcaacgccataacaaccactcttcaccttac |
489 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33368114 |
taactaaagctctcgttcactacgcctcctcctcgaactccaccaccaaatccatgtccttttcagaaatcaacgccataacaaccactcttcaccttac |
33368015 |
T |
|
| Q |
490 |
accaaaccccaacttccttatctttggtctcacccaagagtcccttctctg |
540 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33368014 |
accaaaccccaacttccttatctttggtctcacccaagagtcccttctctg |
33367964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 407 - 540
Target Start/End: Complemental strand, 33372298 - 33372165
Alignment:
| Q |
407 |
cactacgcctcctcctcgaactccaccaccaaatccatgtccttttcagaaatcaacgccataacaaccactcttcaccttacaccaaaccccaacttcc |
506 |
Q |
| |
|
||||| |||||||||| ||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33372298 |
cactatgcctcctccttaaacaccaccaccaaatccatgtcctttgaagaaatcaacgctataacaaccactcttcaccttacaccacaccccaacttcc |
33372199 |
T |
|
| Q |
507 |
ttatctttggtctcacccaagagtcccttctctg |
540 |
Q |
| |
|
| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
33372198 |
tcatctttggtctcacccatgagtcacttctctg |
33372165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 33372412 - 33372372
Alignment:
| Q |
290 |
ttcttcactatagtcttcactcttactctaatcacaaccat |
330 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
33372412 |
ttcttcactatagtcttcactctcactctcatcaccaccat |
33372372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University