View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13434_low_9 (Length: 345)
Name: NF13434_low_9
Description: NF13434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13434_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 7611097 - 7611397
Alignment:
| Q |
1 |
actcgtattttaattattgcgctccatatttattttttcttnnnnnnnttcccattttgtaaggtctatcttaacagtttattgcgttggattgaaaact |
100 |
Q |
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| T |
7611097 |
actcgtattttaattattgcgctccatatttattttttcttaaaaaaatccccattttgtaaggtctatcttaacagtttattgcgttggattgaaaact |
7611196 |
T |
|
| Q |
101 |
ttataaggttatccagatttaaatcttggatctcttatgtgtgtgtcatatttcaagtagtattttgaaaccttacttataaataaaaaagctcaagatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7611197 |
ttataaggttatccagatttaaatcttggatctcttatgtgcgtgtcatatttcaagtagtattttgaaaccttacttataaataaaaaatctcaagatc |
7611296 |
T |
|
| Q |
201 |
gtttgaataatcat-nnnnnnnttataaagtaagatgattttttaatatgttataagtttgtaaaaacaaaatatgttcgagtaaaatgagattgaatta |
299 |
Q |
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|||||||||||||| ||||||||||||||| | |||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7611297 |
gtttgaataatcataaaaaatattataaagtaagatgttattttaaaaggttataagtttgtaaaaacaaaatattttcgagtaaaatgagattgaatta |
7611396 |
T |
|
| Q |
300 |
g |
300 |
Q |
| |
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| |
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| T |
7611397 |
g |
7611397 |
T |
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